org.youscope.plugin.lifecelldetection

Class CellDetectionMeasurementConfiguration

java.lang.Object

org.youscope.common.measurement.MeasurementConfiguration

org.youscope.plugin.lifecelldetection.CellDetectionMeasurementConfiguration

All Implemented Interfaces:

java.io.Serializable, java.lang.Cloneable, Configuration

public class CellDetectionMeasurementConfiguration
extends MeasurementConfiguration

This class represents the configuration of a continuous measurement, for which the cells in the images are life detected.

Author:

Moritz Lang

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field and Description
static java.lang.String	TYPE_IDENTIFIER The identifier for this measurement type.

Constructor Summary

Constructors

Constructor and Description
CellDetectionMeasurementConfiguration()

Method Summary

Modifier and Type	Method and Description
java.lang.String	getChannel() The channel where the images should be made.
java.lang.String	getChannelGroup()
CellDetectionConfiguration	getDetectionAlgorithmConfiguration() Return the configuration of the cell detection algorithm to use.
double	getExposure()
java.lang.String	getImageSaveName() Returns the name under which the image should be saved.
int	getImagingPeriod()
java.lang.String	getTypeIdentifier() Returns a unique identifier for this configuration type.
CellVisualizationConfiguration	getVisualizationAlgorithmConfiguration() Returns the configuration of the cell visualization algorithm to use.
boolean	isSaveImages() Returns true if the images should be saved to the disk.
void	setChannel(java.lang.String channelGroup, java.lang.String channel) The channel where the images should be made.
void	setDetectionAlgorithmConfiguration(CellDetectionConfiguration detectionAlgorithmConfiguration) Sets the configuration of the cell detection algorithm to use.
void	setExposure(double exposure)
void	setImageSaveName(java.lang.String name) Sets the name under which the image should be saved.
void	setImagingPeriod(int imagingPeriod)
void	setSaveImages(boolean saveImages)
void	setVisualizationAlgorithmConfiguration(CellVisualizationConfiguration visualizationAlgorithmConfiguration) Set the configuration of the cell visualization algorithm to use.

Methods inherited from class org.youscope.common.measurement.MeasurementConfiguration

checkConfiguration, clone, getDeviseSettingsOff, getDeviseSettingsOn, getMeasurementRuntime, getName, getSaveSettings, setDeviseSettingsOff, setDeviseSettingsOn, setMeasurementRuntime, setName, setSaveSettings

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

TYPE_IDENTIFIER

public static final java.lang.String TYPE_IDENTIFIER

The identifier for this measurement type.

See Also:

Constant Field Values

Constructor Detail

CellDetectionMeasurementConfiguration

public CellDetectionMeasurementConfiguration()

Method Detail

getTypeIdentifier

public java.lang.String getTypeIdentifier()

Description copied from interface: Configuration

Returns a unique identifier for this configuration type. The identifier is used to determine factories and addons to construct and configure jobs, measurements, etc., given a corresponding configuration. Make sure that the ID returned is unique. The returned identifier should conform to "XXX.YYY", where XXX stands for an identifier of the organizational unit or the person who created the configuration (e.g. ETH, Smith, Cindarella), and YYY stands for an identifier of the specific kind of configuration (e.g. AutofocusJob, PlatePosition, MicroplateMeasurement). Optionally, additional hierarchy levels can be defined by additional separators ., e.g. "YouScope.AutofocusJob.Version1.1" The identifier should not contain spaces, non-ASCII characters, or colons (except for hierarchy level separation). Identifiers should start with a capital character, i.e. A-Z. Make sure to not use the same identifier for different configurations, since this might result in unexpected behavior or errors. Make

Returns:

Unique identifier of the configuration type.

setChannel

public void setChannel(java.lang.String channelGroup,
                       java.lang.String channel)

The channel where the images should be made. Set to an empty string if the current channel should be taken.

Parameters:

channelGroup - The group in which the channel is defined.

channel - The channel.

getChannel

public java.lang.String getChannel()

The channel where the images should be made.

Returns:

The channel.

getChannelGroup

public java.lang.String getChannelGroup()

Returns:

the group of the channel

setExposure

public void setExposure(double exposure)

Parameters:

exposure - the exposure to set

getExposure

public double getExposure()

Returns:

the exposure

setSaveImages

public void setSaveImages(boolean saveImages)

Parameters:

saveImages - the saveImages to set

getImageSaveName

public java.lang.String getImageSaveName()

Returns the name under which the image should be saved.

Returns:

name of job.

setImageSaveName

public void setImageSaveName(java.lang.String name)

Sets the name under which the image should be saved.

Parameters:

name -

setImagingPeriod

public void setImagingPeriod(int imagingPeriod)

Parameters:

imagingPeriod - The time between two successive images.

getImagingPeriod

public int getImagingPeriod()

Returns:

The time between two successive images.

isSaveImages

public boolean isSaveImages()

Returns true if the images should be saved to the disk.

Returns:

True if images should be saved.

setDetectionAlgorithmConfiguration

public void setDetectionAlgorithmConfiguration(CellDetectionConfiguration detectionAlgorithmConfiguration)

Sets the configuration of the cell detection algorithm to use.

Parameters:

detectionAlgorithmConfiguration - Configuration of the algorithm.

getDetectionAlgorithmConfiguration

public CellDetectionConfiguration getDetectionAlgorithmConfiguration()

Return the configuration of the cell detection algorithm to use.

Returns:

Configuration of the algorithm.

getVisualizationAlgorithmConfiguration

public CellVisualizationConfiguration getVisualizationAlgorithmConfiguration()

Returns the configuration of the cell visualization algorithm to use. Returns null if not generating a cell detection visualization image.

Returns:

Cell visualization configuration, or null.

setVisualizationAlgorithmConfiguration

public void setVisualizationAlgorithmConfiguration(CellVisualizationConfiguration visualizationAlgorithmConfiguration)

Set the configuration of the cell visualization algorithm to use. Set to null to not generate a cell detection visualization image.

Parameters:

visualizationAlgorithmConfiguration - Cell visualization configuration, or null.