org.youscope.plugin.quickdetect

Class QuickDetectConfiguration

java.lang.Object

org.youscope.common.resource.ResourceConfiguration

org.youscope.addon.celldetection.CellDetectionConfiguration

org.youscope.plugin.quickdetect.QuickDetectConfiguration

All Implemented Interfaces:

java.io.Serializable, java.lang.Cloneable, Configuration, TableProducerConfiguration

public class QuickDetectConfiguration
extends CellDetectionConfiguration

Configuration of the QuickDetect cell detection algorithm.

Author:

Moritz Lang

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field and Description
static java.lang.String	TYPE_IDENTIFIER The identifier for this configuration.

Constructor Summary

Constructors

Constructor and Description
QuickDetectConfiguration() Constructor.

Method Summary

Modifier and Type	Method and Description
QuickDetectConfiguration	clone()
boolean	equals(java.lang.Object obj)
double	getDetectionThreshold() Returns the detection threshold (0-1) of the algorithm.
int	getInternalBinning() Returns the binning internally used by the algorithm.
int	getMaxCellDiameter() Returns the maximal diameter in pixels a cell must have.
int	getMinCellDiameter() Returns the minimal diameter in pixels a cell must have.
TableDefinition	getProducedTableDefinition() Returns the definition of the table layout of the tables produced by this producer, e.g.
java.lang.String	getTypeIdentifier() Returns a unique identifier for this configuration type.
int	hashCode()
boolean	isGenerateLabelImage() Returns true if the detection algorithm with the current configuration generates a label image.
void	setDetectionThreshold(double detectionThreshold) Sets the detection threshold (0-1) of the algorithm.
void	setGenerateLabelImage(boolean generateDetectionImage) Set to true if a label image should be generated.
void	setInternalBinning(int internalBinning) Sets the binning internally used by the algorithm.
void	setMaxCellDiameter(int maxCellDiameter) Sets the maximal diameter in pixels a cell must have.
void	setMinCellDiameter(int minCellDiameter) Sets the minimal diameter in pixels a cell must have.

Methods inherited from class org.youscope.common.resource.ResourceConfiguration

checkConfiguration

Methods inherited from class java.lang.Object

finalize, getClass, notify, notifyAll, toString, wait, wait, wait

Field Detail

TYPE_IDENTIFIER

public static final java.lang.String TYPE_IDENTIFIER

The identifier for this configuration.

See Also:

Constant Field Values

Constructor Detail

QuickDetectConfiguration

public QuickDetectConfiguration()

Constructor.

Method Detail

clone

public QuickDetectConfiguration clone()

Overrides:

clone in class CellDetectionConfiguration

setInternalBinning

public void setInternalBinning(int internalBinning)

Sets the binning internally used by the algorithm.

Parameters:

internalBinning -

getInternalBinning

public int getInternalBinning()

Returns the binning internally used by the algorithm.

Returns:

internal binning.

setDetectionThreshold

public void setDetectionThreshold(double detectionThreshold)

Sets the detection threshold (0-1) of the algorithm. Default = 0.01;

Parameters:

detectionThreshold -

getDetectionThreshold

public double getDetectionThreshold()

Returns the detection threshold (0-1) of the algorithm. Default = 0.01;

Returns:

detection threshold.

setMinCellDiameter

public void setMinCellDiameter(int minCellDiameter)

Sets the minimal diameter in pixels a cell must have.

Parameters:

minCellDiameter -

getMinCellDiameter

public int getMinCellDiameter()

Returns the minimal diameter in pixels a cell must have.

Returns:

minimal diameter in pixels

setMaxCellDiameter

public void setMaxCellDiameter(int maxCellDiameter)

Sets the maximal diameter in pixels a cell must have.

Parameters:

maxCellDiameter -

getMaxCellDiameter

public int getMaxCellDiameter()

Returns the maximal diameter in pixels a cell must have.

Returns:

maximal diameter in pixels.

getTypeIdentifier

public java.lang.String getTypeIdentifier()

Description copied from interface: Configuration

Returns a unique identifier for this configuration type. The identifier is used to determine factories and addons to construct and configure jobs, measurements, etc., given a corresponding configuration. Make sure that the ID returned is unique. The returned identifier should conform to "XXX.YYY", where XXX stands for an identifier of the organizational unit or the person who created the configuration (e.g. ETH, Smith, Cindarella), and YYY stands for an identifier of the specific kind of configuration (e.g. AutofocusJob, PlatePosition, MicroplateMeasurement). Optionally, additional hierarchy levels can be defined by additional separators ., e.g. "YouScope.AutofocusJob.Version1.1" The identifier should not contain spaces, non-ASCII characters, or colons (except for hierarchy level separation). Identifiers should start with a capital character, i.e. A-Z. Make sure to not use the same identifier for different configurations, since this might result in unexpected behavior or errors. Make

Returns:

Unique identifier of the configuration type.

hashCode

public int hashCode()

Overrides:

hashCode in class java.lang.Object

equals

public boolean equals(java.lang.Object obj)

Overrides:

equals in class java.lang.Object

setGenerateLabelImage

public void setGenerateLabelImage(boolean generateDetectionImage)

Set to true if a label image should be generated.

Parameters:

generateDetectionImage - True if detection image should be generated, otherwise false.

isGenerateLabelImage

public boolean isGenerateLabelImage()

Description copied from class: CellDetectionConfiguration

Returns true if the detection algorithm with the current configuration generates a label image.

Specified by:

isGenerateLabelImage in class CellDetectionConfiguration

Returns:

True if a detection image is generated with this algorithm, false otherwise.

getProducedTableDefinition

public TableDefinition getProducedTableDefinition()

Description copied from interface: TableProducerConfiguration

Returns the definition of the table layout of the tables produced by this producer, e.g. the number and types of its columns. This function should return the same TableDefinition as is returned by a measurement component created by this configuration, see TableProducer.getProducedTableDefinition().

Returns:

Information about of the produced tables.