Uses of Class
org.youscope.common.measurement.MeasurementRunningException

Packages that use MeasurementRunningException

Package	Description
org.youscope.common.job
org.youscope.common.job.basicjobs
org.youscope.common.measurement
org.youscope.common.saving
org.youscope.plugin.autofocus
org.youscope.plugin.composedimaging
org.youscope.plugin.continousimaging
org.youscope.plugin.controller
org.youscope.plugin.dropletmicrofluidics
org.youscope.plugin.fluigent
org.youscope.plugin.lifecelldetection
org.youscope.plugin.nemesys
org.youscope.plugin.onix
org.youscope.plugin.outoffocus
org.youscope.plugin.repeatjob
org.youscope.plugin.slimjob
org.youscope.plugin.waitforuser

Uses of MeasurementRunningException in org.youscope.common.job

Methods in org.youscope.common.job that throw MeasurementRunningException

Modifier and Type	Method and Description
void	EditableJobContainerAdapter.addJob(Job job)
void	EditableJobContainer.addJob(Job job) Adds a job to the end of the container.
protected void	JobAdapter.assertRunning() Convenient method to throw an exception if a parameter of a job should be changed, but the job is currently executed.
void	EditableJobContainerAdapter.clearJobs()
void	EditableJobContainer.clearJobs() Removes all jobs from this container.
void	EditableJobContainerAdapter.insertJob(Job job, int jobIndex)
void	EditableJobContainer.insertJob(Job job, int jobIndex) Inserts a job at the given index.
void	EditableJobContainerAdapter.removeJob(Job job)
void	EditableJobContainer.removeJob(Job job) Removes a previously added job.

Uses of MeasurementRunningException in org.youscope.common.job.basicjobs

Methods in org.youscope.common.job.basicjobs that throw MeasurementRunningException

Modifier and Type	Method and Description
void	DeviceSettingJob.addDeviceSetting(java.lang.String device, java.lang.String property, java.lang.String value) Adds a new device setting.
void	DeviceSettingJob.clearDeviceSettings() Removes all settings.
void	ScriptingJob.putVariable(java.lang.String key, java.lang.Object value) Adds a key value pair to the script engine, so that a variable with the name can be used in the script.
void	ContinuousImagingJob.setBurstImaging(boolean burst) Sets if the images are produced in burst mode.
void	ImagingJob.setCamera(java.lang.String camera) Sets the camera with which it should be imaged.
void	ContinuousImagingJob.setCamera(java.lang.String camera) Sets the camera with which it should be imaged.
void	ImagingJob.setCameras(java.lang.String[] cameras) Sets the cameras with which it should be imaged.
void	ContinuousImagingJob.setCameras(java.lang.String[] cameras) Sets the cameras with which it should be imaged.
void	ImagingJob.setChannel(java.lang.String deviceGroup, java.lang.String channel) Sets the channel.
void	ContinuousImagingJob.setChannel(java.lang.String deviceGroup, java.lang.String channel) Sets the channel.
void	DeviceSettingJob.setDeviceSettings(DeviceSetting[] settings) Sets the device settings made when job runs.
void	ImagingJob.setExposure(double exposure) Sets the exposure.
void	ContinuousImagingJob.setExposure(double exposure) Sets the exposure.
void	ImagingJob.setExposures(double[] exposures) Sets the exposures of the cameras.
void	ContinuousImagingJob.setExposures(double[] exposures) Sets the exposures of the cameras.
void	FocusingJob.setFocusAdjustmentTime(int adjustmentTime) Sets the focus adjustment time (the time the microscope is paused after the new focus position was set) in ms.
void	FocusingJob.setFocusDevice(java.lang.String focusDevice) Sets the focus device name for which the position should be changed.
void	ImagingJob.setImageDescription(java.lang.String description) Sets a short string describing the images which are made by this job.
void	ContinuousImagingJob.setImageDescription(java.lang.String description) Sets a short string describing the images which are made by this job.
void	FocusingJob.setPosition(double position, boolean relative) Sets the position the focus/autofocus should go to.
void	ChangePositionJob.setPosition(double x, double y) Sets the position where the microscope should move to.
void	ChangePositionJob.setRelativePosition(double dx, double dy) Sets the relative distance for which the microscope should move, starting at the current position.
void	ScriptingJob.setRemoteScriptEngine(RemoteScriptEngine scriptEngine) Sets the remote script engine which should be null.
void	ScriptingJob.setScriptEngine(java.lang.String engine) Sets the script engine with which the scripts should be evaluated.
void	ScriptingJob.setScriptFile(java.net.URL scriptFile) Sets the file of the script which should be evaluated by the corresponding script engine.
void	ChangePositionJob.setStageDevice(java.lang.String deviceID) Sets the ID of the stage device whose position should be changed.
void	WaitJob.setWaitTime(long waitTime) Sets the time delay in ms.

Uses of MeasurementRunningException in org.youscope.common.measurement

Methods in org.youscope.common.measurement that throw MeasurementRunningException

Modifier and Type	Method and Description
void	Measurement.addFinishDeviceSetting(DeviceSetting setting) Adds a device settings which should be applied (once) the measurement ends.
MeasurementTask	Measurement.addMultiplePeriodTask(int[] periods, int breakTime, int startTime) Adds a new task to the measurement so that at times {startTime, startTime + periods[0], startTime + periods[0] + periods[1], ..., startTime + sum_{i=0:size-2}(periods[i]), startTime + sum_{i=0:size-1}(periods[i]) + breakTime, startTime + sum_{i=0:size-1}(periods[i]) + breakTime + periods[0]} the jobs of the task will be executed.
MeasurementTask	Measurement.addMultiplePeriodTask(int[] periods, int breakTime, int startTime, int numExecutions) Adds a new task to the measurement so that at times {startTime, startTime + periods[0], startTime + periods[0] + periods[1], ..., startTime + sum_{i=0:size-2}(periods[i]), startTime + sum_{i=0:size-1}(periods[i]) + breakTime, startTime + sum_{i=0:size-1}(periods[i]) + breakTime + periods[0]} the jobs of the task will be executed.
void	Measurement.addStartupDeviceSetting(DeviceSetting setting) Adds a device setting which should be applied (once) the measurement starts.
MeasurementTask	Measurement.addTask(int period, boolean fixedTimes, int startTime) Adds a new task to the measurement so that at times ( + i * ) ms, i = 0,1,2,..., the jobs of the task will be executed.
MeasurementTask	Measurement.addTask(int period, boolean fixedTimes, int startTime, int numExecutions) Adds a new task to the measurement so that at times ( + i * ) ms, i = 0,1,2,..., the jobs of the task will be executed.
void	Measurement.setFinishDeviceSettings(DeviceSetting[] settings) Sets the device settings which should be applied (once) the measurement ends.
void	Measurement.setLockMicroscopeWhileRunning(boolean lock) Sets if write access to the microscope is locked during the measurement.
void	Measurement.setRuntime(int measurementRuntime) Sets the runtime of the measurement.
void	Measurement.setStartupDeviceSettings(DeviceSetting[] settings) Sets the device settings which should be applied (once) the measurement starts.
void	Measurement.setTypeIdentifier(java.lang.String type) Sets an identifier for the type of this measurement.

Uses of MeasurementRunningException in org.youscope.common.saving

Methods in org.youscope.common.saving that throw MeasurementRunningException

Modifier and Type	Method and Description
void	MeasurementSaver.setConfiguration(MeasurementConfiguration configuration) Sets the configuration of the measurement.
void	MeasurementSaver.setSaveSettings(SaveSettings saveSettings) Sets the settings how the measurement should be saved to the disk (e.g.

Uses of MeasurementRunningException in org.youscope.plugin.autofocus

Methods in org.youscope.plugin.autofocus that throw MeasurementRunningException

Modifier and Type	Method and Description
void	AutoFocusJob.setChannel(java.lang.String deviceGroup, java.lang.String channel) Sets the channel.
void	AutoFocusJob.setExposure(double exposure) Sets the exposure.
void	AutoFocusJob.setFocusAdjustmentTime(int adjustmentTime) Sets the focus adjustment time (the time the microscope is paused after the new focus position was set) in ms.
void	AutoFocusJob.setFocusDevice(java.lang.String focusDevice) Sets the focus device name for which the position should be changed.
void	AutoFocusJob.setFocusScoreAlgorithm(FocusScoreResource focusScoreAlgorithm) Sets the algorithm with which the score of an image is calculated (i.e.
void	AutoFocusJob.setFocusSearchAlgorithm(FocusSearchResource focusSearchAlgorithm) Sets the algorithm with which it is determined at which focus positions images are made to determine the best focal plane.
void	AutoFocusJob.setImageDescription(java.lang.String description) Sets a short string describing the images which are made by this job.
void	AutoFocusJob.setRememberFocus(boolean rememberFocus) Set to true if next focus search should be centered around the last iterations maximal focal plane.
void	AutoFocusJob.setResetFocusAfterSearch(boolean resetFocusAfterSearch) Defines if the focus should be reset to its original value after the job (and all sub-jobs) finished.

Uses of MeasurementRunningException in org.youscope.plugin.composedimaging

Methods in org.youscope.plugin.composedimaging that throw MeasurementRunningException

Modifier and Type	Method and Description
void	ComposedImagingJob.setCameras(java.lang.String[] cameras) Sets the cameras with which it should be imaged.
void	ComposedImagingJob.setChannel(java.lang.String deviceGroup, java.lang.String channel) Sets the channel.
void	StaggeringJob.setDeltaX(double deltaX) Sets the distance between two horizontally attached sub-images.
void	PlateScanningJob.setDeltaX(double deltaX) Sets the distance between two horizontally attached sub-images.
void	ComposedImagingJob.setDeltaX(double deltaX) Sets the distance between two horizontally attached sub-images.
void	StaggeringJob.setDeltaY(double deltaY) Sets the distance between two vertically attached sub-images.
void	PlateScanningJob.setDeltaY(double deltaY) Sets the distance between two vertically attached sub-images.
void	ComposedImagingJob.setDeltaY(double deltaY) Sets the distance between two vertically attached sub-images.
void	ComposedImagingJob.setExposure(double exposure) Sets the exposure.
void	ComposedImagingJob.setExposures(double[] exposures) Sets the exposures of the cameras.
void	StaggeringJob.setNumIterationsBreak(int numTilesBreak) Set the number of iterations for which nothing should be done before imaging in the next iteration the defined number of tiles.
void	StaggeringJob.setNumTiles(java.awt.Dimension numTiles) Sets the number of tiles/sub-images
void	PlateScanningJob.setNumTiles(java.awt.Dimension numTiles) Sets the number of tiles/sub-images
void	StaggeringJob.setNumTilesPerIteration(int numTilesPerIteration) Set the number of tiles which should be imaged per iteration.
void	ComposedImagingJob.setSubImageNumber(java.awt.Dimension imageNumbers) Sets the number of sub-images

Uses of MeasurementRunningException in org.youscope.plugin.continousimaging

Methods in org.youscope.plugin.continousimaging that throw MeasurementRunningException

Modifier and Type	Method and Description
void	ShortContinuousImagingJob.setBurstImaging(boolean burst) Sets if the images are produced in burst mode.
void	ShortContinuousImagingJob.setCamera(java.lang.String camera) Sets the camera with which it should be imaged.
void	ShortContinuousImagingJob.setCameras(java.lang.String[] cameras) Sets the cameras with which it should be imaged.
void	ShortContinuousImagingJob.setChannel(java.lang.String deviceGroup, java.lang.String channel) Sets the channel.
void	ShortContinuousImagingJob.setExposure(double exposure) Sets the exposure.
void	ShortContinuousImagingJob.setExposures(double[] exposures) Sets the exposures of the cameras.
void	ShortContinuousImagingJob.setImageDescription(java.lang.String description) Sets a short string describing the images which are made by this job.
void	ShortContinuousImagingJob.setImagingPeriod(int imagingPeriod)
void	ShortContinuousImagingJob.setNumImages(int numImages) Sets the number of images which should be taken.

Uses of MeasurementRunningException in org.youscope.plugin.controller

Methods in org.youscope.plugin.controller that throw MeasurementRunningException

Modifier and Type	Method and Description
void	ControllerJob.setControllerScript(java.lang.String controllerScript) Sets the script for the controller which gets evaluated by the script engine.
void	ControllerJob.setControllerScriptEngine(java.lang.String engine) Sets the script engine with which the scripts should be evaluated.
void	ControllerJob.setInputJob(Job inputJob) Sets the job which should be used to create the table data used as input for the controller.
void	ControllerJob.setOutputJob(Job outputJob) Sets the job which should be used to consume the output from the controller.

Uses of MeasurementRunningException in org.youscope.plugin.dropletmicrofluidics

Methods in org.youscope.plugin.dropletmicrofluidics that throw MeasurementRunningException

Modifier and Type	Method and Description
void	DropletMicrofluidicJob.setController(DropletControllerResource controller) Sets the control algorithm used to correct droplet heights by changing inflow or outflow.
void	DropletMicrofluidicJob.setInputJob(AutoFocusJob inputJob) Sets the input job.
void	DropletMicrofluidicJob.setObserver(DropletObserverResource observer) Sets the observer algorithm used to estimate the droplet heights from periodical autofocus measurements.
void	DropletMicrofluidicJob.setOutputJob(NemesysJob outputJob) Sets the nemesys job which is used as the output

Uses of MeasurementRunningException in org.youscope.plugin.fluigent

Methods in org.youscope.plugin.fluigent that throw MeasurementRunningException

Modifier and Type	Method and Description
void	FluigentJob.setFluigentDeviceName(java.lang.String deviceName) Sets the name of the Fluigent device.
void	FluigentJob.setScript(java.lang.String script) Sets the script which gets evaluated by the script engine every time the job runs.
void	FluigentJob.setScriptEngine(java.lang.String engine) Sets the script engine with which the scripts should be evaluated.

Uses of MeasurementRunningException in org.youscope.plugin.lifecelldetection

Methods in org.youscope.plugin.lifecelldetection that throw MeasurementRunningException

Modifier and Type	Method and Description
void	CellDetectionJob.setDetectionAlgorithm(CellDetectionAddon detectionAlgorithm) Sets the algorithm which should be used for cell detection.
void	CellDetectionJob.setImageDescription(java.lang.String description) Sets a short string describing the images which are made by this job.
void	CellDetectionJob.setMinimalTimeMS(long minimalTimeMS) Sets the minimal time (in ms) the execution of the job should take.
void	CellDetectionJob.setVisualizationAlgorithm(CellVisualizationAddon visualizationAlgorithm) Sets the algorithm which should be used for cell visualization.

Uses of MeasurementRunningException in org.youscope.plugin.nemesys

Methods in org.youscope.plugin.nemesys that throw MeasurementRunningException

Modifier and Type	Method and Description
void	NemesysJob.setNemesysDeviceName(java.lang.String deviceName) Sets the name of the Nemesys device.
void	NemesysJob.setScript(java.lang.String script) Sets the script which gets evaluated by the script engine every time the job runs.
void	NemesysJob.setScriptEngine(java.lang.String engine) Sets the script engine with which the scripts should be evaluated.

Uses of MeasurementRunningException in org.youscope.plugin.onix

Methods in org.youscope.plugin.onix that throw MeasurementRunningException

Modifier and Type	Method and Description
void	OnixJob.setOnixProtocol(java.lang.String onixProtocol) Sets the protocol which gets evaluated on the onix device every time the job gets evaluated.
void	OnixJob.setWaitUntilFinished(boolean waitUntilFinished) If true, the job waits when evaluating the onix protocol until the protocol is finished.

Uses of MeasurementRunningException in org.youscope.plugin.outoffocus

Methods in org.youscope.plugin.outoffocus that throw MeasurementRunningException

Modifier and Type	Method and Description
void	OutOfFocusJob.setChannel(java.lang.String deviceGroup, java.lang.String channel) Sets the channel.
void	OutOfFocusJob.setExposure(double exposure) Sets the exposure.
void	OutOfFocusJob.setFocusAdjustmentTime(int adjustmentTime) Sets the focus adjustment time (the time the microscope is paused after the new focus position was set) in ms.
void	OutOfFocusJob.setFocusDevice(java.lang.String focusDevice) Sets the focus device name for which the position should be changed.
void	OutOfFocusJob.setImageDescription(java.lang.String description) Sets a short string describing the images which are made by this job.
void	OutOfFocusJob.setOffset(double offset) Sets the focus offset in which the image should be taken.

Uses of MeasurementRunningException in org.youscope.plugin.repeatjob

Methods in org.youscope.plugin.repeatjob that throw MeasurementRunningException

Modifier and Type	Method and Description
void	RepeatJob.setNumRepeats(int numRepeats) Sets the number of times the sub-jobs should be repeated each time the repeat-job is executed.

Uses of MeasurementRunningException in org.youscope.plugin.slimjob

Methods in org.youscope.plugin.slimjob that throw MeasurementRunningException

Modifier and Type	Method and Description
void	SlimJob.setImageDescription(java.lang.String description) Sets a short string describing the images which are made by this job.
void	SlimJob.setInnerRadius(int innerRadius) Sets the radius of the inner circle (the hole in the "donut").
void	SlimJob.setMaskFileName(java.lang.String maskFileName) Sets the file name of the mask which should be used to define foreground and background.
void	SlimJob.setMaskX(int maskX) Sets the X position of the center of the inner and outer circle (the "donut").
void	SlimJob.setMaskY(int maskY) Sets the Y position of the center of the inner and outer circle (the "donut").
void	SlimJob.setOuterRadius(int outerRadius) Sets the radius of the outer circle (the "donut").
void	SlimJob.setPhaseShiftMask(int maskID, int phaseShift) Sets the phase shift of the mask (the donut) for the maskID mask.
void	SlimJob.setPhaseShiftOutside(int phaseShiftOutside) Sets the phase shift outside of the mask (background of donut).
void	SlimJob.setReflectorDevice(java.lang.String reflectorDevice) Returns the name of the reflector device which should be used to generate the pattern.
void	SlimJob.setSlimDelayMs(int delayMs) Sets the time delay in ms between changing the SLIM reflector settings and taking an image.

Uses of MeasurementRunningException in org.youscope.plugin.waitforuser

Methods in org.youscope.plugin.waitforuser that throw MeasurementRunningException

Modifier and Type	Method and Description
void	WaitForUserJob.setMeasurementCallback(WaitForUserCallback callback) Sets the callback to the client used by this job.
void	WaitForUserJob.setMessage(java.lang.String message) Sets the message to be displayed to the user.