org.youscope.plugin.cellx

Class CellXConfiguration

java.lang.Object

org.youscope.common.resource.ResourceConfiguration

org.youscope.addon.celldetection.CellDetectionConfiguration

org.youscope.plugin.cellx.CellXConfiguration

All Implemented Interfaces:

java.io.Serializable, java.lang.Cloneable, Configuration, TableProducerConfiguration

public class CellXConfiguration
extends CellDetectionConfiguration

Author:

Moritz Lang

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field and Description
static java.lang.String	TYPE_IDENTIFIER The identifier for this configuration.

Constructor Summary

Constructors

Constructor and Description
CellXConfiguration() Constructor.

Method Summary

Modifier and Type	Method and Description
CellXConfiguration	clone()
java.lang.String	getConfigurationFile() Returns the path to the file which contains the configuration settings for the CellX algorithm.
TableDefinition	getProducedTableDefinition() Returns the definition of the table layout of the tables produced by this producer, e.g.
java.lang.String	getTypeIdentifier() Returns a unique identifier for this configuration type.
boolean	isGenerateLabelImage() Returns true if a label image should be generated.
boolean	isTrackCells() Returns true if cells should not only be segmented, but also be tracked between adjacent frames.
void	setConfigurationFile(java.lang.String configurationFile) Sets the path to the file which contains the configuration settings for the CellX algorithm.
void	setGenerateLabelImage(boolean generateDetectionImage) Set to true if a label image should be generated.
void	setTrackCells(boolean trackCells) Set to true if cells should not only be segmented, but also be tracked between adjacent frames.

Methods inherited from class org.youscope.common.resource.ResourceConfiguration

checkConfiguration

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

TYPE_IDENTIFIER

public static final java.lang.String TYPE_IDENTIFIER

The identifier for this configuration.

See Also:

Constant Field Values

Constructor Detail

CellXConfiguration

public CellXConfiguration()

Constructor.

Method Detail

clone

public CellXConfiguration clone()

Overrides:

clone in class CellDetectionConfiguration

getTypeIdentifier

public java.lang.String getTypeIdentifier()

Description copied from interface: Configuration

Returns a unique identifier for this configuration type. The identifier is used to determine factories and addons to construct and configure jobs, measurements, etc., given a corresponding configuration. Make sure that the ID returned is unique. The returned identifier should conform to "XXX.YYY", where XXX stands for an identifier of the organizational unit or the person who created the configuration (e.g. ETH, Smith, Cindarella), and YYY stands for an identifier of the specific kind of configuration (e.g. AutofocusJob, PlatePosition, MicroplateMeasurement). Optionally, additional hierarchy levels can be defined by additional separators ., e.g. "YouScope.AutofocusJob.Version1.1" The identifier should not contain spaces, non-ASCII characters, or colons (except for hierarchy level separation). Identifiers should start with a capital character, i.e. A-Z. Make sure to not use the same identifier for different configurations, since this might result in unexpected behavior or errors. Make

Returns:

Unique identifier of the configuration type.

setGenerateLabelImage

public void setGenerateLabelImage(boolean generateDetectionImage)

Set to true if a label image should be generated.

Parameters:

generateDetectionImage - True if detection image should be generated, otherwise false.

isGenerateLabelImage

public boolean isGenerateLabelImage()

Returns true if a label image should be generated.

Specified by:

isGenerateLabelImage in class CellDetectionConfiguration

Returns:

True if detection image should be generated, otherwise false.

setConfigurationFile

public void setConfigurationFile(java.lang.String configurationFile)

Sets the path to the file which contains the configuration settings for the CellX algorithm.

Parameters:

configurationFile - Absolute path to the configuration file (*.xml).

getConfigurationFile

public java.lang.String getConfigurationFile()

Returns the path to the file which contains the configuration settings for the CellX algorithm.

Returns:

Absolute path to the configuration file (*.xml), or null.

getProducedTableDefinition

public TableDefinition getProducedTableDefinition()

Description copied from interface: TableProducerConfiguration

Returns the definition of the table layout of the tables produced by this producer, e.g. the number and types of its columns. This function should return the same TableDefinition as is returned by a measurement component created by this configuration, see TableProducer.getProducedTableDefinition().

Returns:

Information about of the produced tables.

setTrackCells

public void setTrackCells(boolean trackCells)

Set to true if cells should not only be segmented, but also be tracked between adjacent frames.

Parameters:

trackCells - True if cells should be tracked.

isTrackCells

public boolean isTrackCells()

Returns true if cells should not only be segmented, but also be tracked between adjacent frames.

Returns:

True if cells should be tracked.