java.lang.Throwable cause
Table cellTable
ImageEvent<T> labelImage
javax.swing.JCheckBox field
CameraField field
ChannelField field
javax.swing.JFormattedTextField field
Property property
Configuration configuration
java.util.ArrayList<E> messageListeners
java.util.ArrayList<E> actionListeners
YouScopeClient client
YouScopeServer server
java.lang.Class<T>[] supportedTypes
javax.swing.JComboBox<E> field
FocusField field
javax.swing.JFormattedTextField field
javax.swing.JTextField field
double[] flowRates
double deltaFlow
int currentDroplet
double[] dropletOffsets
java.util.ArrayList<E> sizeChangeListeners
java.lang.String text
javax.swing.Icon descriptiveImage
java.lang.String iconLegend
java.lang.String header
java.lang.String pageName
YouScopeClient client
javax.swing.JLabel fixedPeriodLabel
javax.swing.JTextField nameField
javax.swing.JRadioButton stopByUser
javax.swing.JRadioButton stopByExecutions
javax.swing.JRadioButton stopByRuntime
javax.swing.JLabel runtimeFieldLabel
javax.swing.JLabel numExecutionsFieldLabel
PeriodField runtimeField
javax.swing.JFormattedTextField numExecutionsField
PeriodField periodField
javax.swing.JRadioButton periodAFAP
javax.swing.JRadioButton periodFixed
javax.swing.JRadioButton periodVarying
PeriodVaryingPanel periodVaryingDataPanel
SubConfigurationPanel<C extends Configuration> saveSettingPanel
java.lang.reflect.Method getPeriod
java.lang.reflect.Method setPeriod
DeviceSettingsPanel deviceSettingsOn
DeviceSettingsPanel deviceSettingsOff
YouScopeClient client
YouScopeServer server
int wellX
int wellY
int posX
int posY
Measurement measurement
boolean isRunning
YouScopeServer manager
javax.swing.JDesktopPane desktop
org.youscope.client.MeasurementControlManager controlManager
org.youscope.client.LogPanel logPanel
javax.swing.JMenuBar menuBar
javax.swing.JList<E> lastMeasurementConfigurationsList
javax.swing.JMenu windowsMenu
javax.swing.JMenu scriptsMenu
java.util.Vector<E> clientFinishListeners
QuickLoggerModel model
int evaluationNumber
long measurementStartTime
int[] loopNumbers
Well well
int[] positions
java.lang.String[] positionTypes
java.lang.String cameraDevice
java.lang.String channel
java.lang.String channelGroup
int adjustmentTime
java.lang.String focusDevice
ImageEvent<T> lastImage
java.lang.Object imageData
int width
int height
int bytesPerPixel
int bitDepth
ExecutionInformation executionInformation
PositionInformation positionInformation
long creationTime
java.lang.String camera
java.lang.String channelGroup
java.lang.String channel
int bands
boolean transposeX
boolean transposeY
boolean switchXY
java.util.ArrayList<E> jobs
java.util.Vector<E> jobListeners
java.util.ArrayList<E> messageListeners
PositionInformation positionInformation
boolean isRunning
java.lang.String jobName
java.util.UUID uniqueID
java.lang.String name
SaveSettingsConfiguration saveSettings
int measurementRuntime
DeviceSetting[] deviseSettingsOn
DeviceSetting[] deviseSettingsOff
java.util.HashMap<K,V> properties
java.util.UUID uniqueIdentifier
java.lang.String microplateTypeID
int numWellsX
int numWellsY
double wellWidth
double wellHeight
int wellPositionsX
int wellPositionsY
double wellMarginX
double wellMarginY
boolean aliasMicroplate
int wellX
int wellY
java.lang.String device
java.lang.String property
java.lang.String value
boolean absoluteValue
int lineNumber
java.lang.String line
java.lang.String columnName
java.lang.String columnDescription
java.lang.Class<T> valueType
boolean nullAllowed
TableDefinition tableDefinition
org.youscope.common.table.ColumnDataStorage<T extends java.io.Serializable>[] columnDataStorages
ExecutionInformation executionInformation
PositionInformation positionInformation
long creationTime
int numRows
Table table
ColumnDefinition<T extends java.io.Serializable>[] columns
java.lang.String tableName
java.lang.String tableDescription
ColumnDefinition<T extends java.io.Serializable>[] columnDefinitions
org.youscope.common.table.TableEntryAdapter<T extends java.io.Serializable>[] entries
int startTime
int numExecutions
int period
boolean fixedTimes
PeriodConfiguration period
java.util.Vector<E> jobs
int[] periods
int breakTime
org.youscope.common.util.RMIReader.RMIReaderRemoteInterface remoteReader
org.youscope.common.util.RMIWriter.RMIWriterRemoteInterface remoteWriter
java.util.Vector<E> jobs
FocusConfiguration focusConfiguration
boolean rememberFocus
java.lang.String focusTableSaveName
boolean resetFocusAfterSearch
java.lang.String channel
java.lang.String channelGroup
double exposure
java.lang.String imageSaveName
FocusScoreConfiguration focusScoreAlgorithm
FocusSearchConfiguration focusSearchAlgorithm
double focusLowerBound
double focusUpperBound
int maxSearchSteps
double tolerance
boolean generateDetectionImage
boolean trackCells
java.lang.String configurationFile
double x
double y
boolean absolute
java.lang.String stageDevice
java.lang.String channel
java.lang.String channelGroup
double exposure
boolean saveImages
java.lang.String imageSaveName
int nx
int ny
double pixelSize
java.awt.Dimension numPixels
double overlap
java.lang.String cameraDevice
java.lang.String pixelSizeID
java.lang.String channel
java.lang.String channelGroup
double exposure
boolean saveImages
java.lang.String imageSaveName
int nx
int ny
double pixelSize
java.lang.String pixelSizeID
java.awt.Dimension numPixels
double overlap
PeriodConfiguration period
java.lang.String cameraDevice
int numTilesX
int numTilesY
double deltaX
double deltaY
java.util.Vector<E> jobs
int numTilesX
int numTilesY
double deltaX
double deltaY
java.util.Vector<E> jobs
int numTilesPerIteration
int numIterationsBreak
java.util.Vector<E> jobs
java.lang.String channel
java.lang.String channelGroup
double exposure
boolean saveImages
java.lang.String imageSaveName
int imagingPeriod
CameraConfiguration camera
ChannelConfiguration channel
double exposure
boolean saveImages
java.lang.String imageSaveName
boolean burstImaging
CameraConfiguration camera
ChannelConfiguration channel
double exposure
boolean saveImages
java.lang.String imageSaveName
int imagingPeriod
int numImages
JobConfiguration inputJob
JobConfiguration outputJob
java.lang.String controllerScript
java.lang.String controllerScriptEngine
java.lang.String controllerTableSaveName
java.util.Vector<E> jobs
java.lang.String customJobName
DeviceSetting[] deviceSettings
JobConfiguration[] jobs
DeviceSetting[][] multiPosDeviceSettings
AutoFocusJobConfiguration autofocusConfiguration
DropletControllerConfiguration controllerConfiguration
DropletObserverConfiguration observerConfiguration
java.lang.String nemesysDevice
java.lang.String dropletTableSaveName
double observerIndividual
double observerMean
int microfluidicChipID
double maxDeltaFlowRate
long timeConstantProportional
long timeConstantIntegral
boolean[] useSyringe
double ratioHeightToVolume
long timeConstantProportional
long timeConstantIntegral
org.youscope.plugin.dropletmicrofluidics.flexiblecontroller.FlexibleSyringeTableRow[] syringeTableRows
double ratioHeightToVolume
double targetFlowRate
double maxDeltaFlowRate
long timeConstantProportional
long timeConstantIntegral
org.youscope.plugin.dropletmicrofluidics.tablecontroller.SyringeTableRow[] syringeTableRows
boolean correctByOutflow
double ratioHeightToVolume
double focusLowerBound
double focusUpperBound
int numSearchSteps
java.lang.String script
java.lang.String scriptEngine
java.lang.String fluigentDevice
java.lang.String tableSaveName
FocusConfiguration focusConfiguration
double position
boolean relative
double glowStrength
ChannelConfiguration channelConfiguration
CameraConfiguration cameraConfiguration
double exposure
boolean saveImages
java.lang.String imageSaveName
boolean drawCellInformation
boolean drawIntoOrgImage
JobConfiguration detectionJob
java.util.Vector<E> quantificationJobs
CellDetectionConfiguration detectionAlgorithmConfiguration
CellVisualizationConfiguration visualizationAlgorithmConfiguration
long minimalTimeMS
java.lang.String controlImageSaveName
java.lang.String segmentationImageSaveName
java.lang.String cellTableSaveName
java.lang.String channel
java.lang.String channelGroup
double exposure
CellDetectionConfiguration detectionAlgorithmConfiguration
CellVisualizationConfiguration visualizationAlgorithmConfiguration
boolean saveImages
java.lang.String imageSaveName
int imagingPeriod
java.util.Vector<E> jobs
boolean enabledAtStartup
boolean shouldRun
javax.swing.JComboBox<E> channelGroupField
javax.swing.JComboBox<E> channelField
javax.swing.JLabel cameraLabel
javax.swing.JComboBox<E> cameraField
javax.swing.JFormattedTextField exposureField
javax.swing.JFormattedTextField imagingPeriodField
ContinousMeasurementPanel mainPanel
javax.swing.JCheckBox increaseContrastField
javax.swing.JCheckBox autoContrastField
HistogramPlot histogram
YouScopeClient client
YouScopeServer server
javax.swing.JButton startStopButton
boolean doNotFire
Measurement measurement
org.youscope.plugin.livestream.ContinousMeasurementPanel.ImageHandler imageHandler
int imagingPeriod
java.lang.String channel
java.lang.String channelGroup
java.lang.String camera
double exposure
java.awt.image.BufferedImage image
ImageEvent<T> orgImage
int imageNo
boolean increaseContrast
float lowerCutoff
float upperCutoff
YouScopeClient client
YouScopeServer server
org.youscope.plugin.livestream.ContinousMeasurementPanel.LowerPanel lowerPanel
MatlabScoreType scoreAlgorithm
java.util.ArrayList<E> sizeChangeListeners
java.util.Vector<E> configurationListeners
int currentPage
java.awt.CardLayout pagesLayout
javax.swing.JPanel pagesPanel
javax.swing.JButton previousButton
javax.swing.JButton nextButton
java.util.ArrayList<E> sizeChangeListeners
JobConfiguration jobConfiguration
java.util.ArrayList<E> pages
java.util.Vector<E> jobs
java.lang.String pathOptimizerID
java.lang.String stageDevice
MicroplatePositionConfiguration microplatePositions
FocusConfiguration focusConfiguration
java.util.Vector<E> jobs
java.lang.String statisticsFileName
boolean allowEditsWhileRunning
java.lang.String pathOptimizerID
java.lang.String stageDevice
int timePerWell
PeriodConfiguration period
MicroplatePositionConfiguration microplatePositions
FocusConfiguration focusConfiguration
java.util.Hashtable<K,V> hashPositions
boolean[][] measuredWells
boolean[][] measuredPositions
int wellX
int wellY
int tileX
int tileY
CellSelectionTable selectedCells
java.awt.Rectangle cellsLocation
java.awt.Rectangle boundaryLocation
javax.swing.JComboBox<E> numPosField
javax.swing.JLabel numPosLabel
javax.swing.JFormattedTextField borderField
javax.swing.JLabel borderLabel
javax.swing.JPanel borderPanel
javax.swing.JPanel numPosPanel
java.util.Vector<E> tableChangeListeners
boolean loading
CellSelectionTable selectedCells
java.util.Vector<E> tableChangeListeners
double focus
double x
double y
java.lang.String channel
java.lang.String channelGroup
double[] exposures
java.lang.String[] cameras
boolean saveImages
java.lang.String imageSaveName
int imagingPeriod
java.lang.String channel
java.lang.String channelGroup
double[] exposures
java.lang.String[] cameras
boolean saveImages
java.lang.String imageSaveName
int imagingPeriod
java.lang.String[] channels
java.lang.String[] configGroups
double[] exposures
Measurement measurement
YouScopeServer server
YouScopeClient client
java.awt.image.BufferedImage[] singleImages
float[] lowerCutoffs
float[] upperCutoffs
double brightFieldOpacity
boolean[] increaseContrasts
java.awt.image.BufferedImage composedImage
java.lang.String script
java.lang.String scriptEngine
java.lang.String nemesysDevice
java.lang.String tableSaveName
java.lang.String onixProtocol
boolean waitUntilFinished
double exposure
DeviceSetting[] deviceSettingsOn
DeviceSetting[] deviceSettingsOff
java.util.Vector<E> transferListeners
boolean running
java.lang.Process transferProcess
java.lang.ProcessBuilder touchProcessBuilder
double maxValue
double minValue
int periodLength
double initialPhase
java.lang.String device
java.lang.String property
FocusConfiguration focusConfiguration
double position
java.lang.String channel
java.lang.String channelGroup
double exposure
boolean saveImages
java.lang.String imageSaveName
int internalBinning
double detectionThreshold
int minCellDiameter
int maxCellDiameter
boolean generateLabelImage
java.util.Vector<E> jobs
int numRepeats
java.util.Vector<E> jobs
boolean useClientScriptEngine
java.lang.String scriptEngine
java.net.URL scriptFile
int lag
java.util.Vector<E> jobs
java.lang.String statisticsFileName
boolean allowEditsWhileRunning
PeriodConfiguration period
java.lang.String reflectorDevice
int maskX
int maskY
int innerRadius
int outerRadius
int phaseShiftOutside
int[] phaseShiftsMask
int slimDelayMS
java.lang.String maskFileName
java.lang.String channel
java.lang.String channelGroup
double exposure
boolean saveImages
java.lang.String camera
java.lang.String imageSaveName
java.lang.String baseFolder
java.lang.String imageFileType
FolderStructureType folderStructureType
java.lang.String imageFileName
java.util.Vector<E> jobs
java.lang.String fileName
java.util.ArrayList<E> tasks
java.lang.String stageDevice
double stageTolerance
java.lang.String message
java.util.Vector<E> jobs
long waitTime
long waitTime
JobConfiguration[] jobs
double[] slideZPositions
FocusConfiguration focusConfiguration
AvailableDeviceDriverInternal deviceDriver
int accessID
org.youscope.starter.Server server
org.youscope.starter.Client client
javax.swing.JRadioButton startClientServerButton
javax.swing.JRadioButton startClientButton
javax.swing.JRadioButton startServerButton
javax.swing.JPanel serverURLPanel
javax.swing.JPanel serverPortPanel
javax.swing.JPanel passwordPanel
javax.swing.JPanel configFilePanel
javax.swing.JCheckBox resetMicroManagerConfiguration
javax.swing.JFormattedTextField urlField
javax.swing.JFormattedTextField portField
javax.swing.JPasswordField passwordField
org.youscope.starter.Starter.ConfigFileChooserComboBox configFileField
javax.swing.JButton startButton
javax.swing.JComboBox<E> cameraField
YouScopeClient client
YouScopeServer server
boolean choice
int numX
int numY
CellSelectionTable.CellSelectionTableModel model
CellSelectionTable.CellSelectionTableTable table
boolean[][] cellSelected
int cellSize
java.util.Vector<E> changeListeners
javax.swing.JList<E> rowHeader
CellSelectionTableConfiguration configuration
CellSelectionTable.CellSelectionRenderer renderer
java.lang.String text
java.lang.String text
javax.swing.JComboBox<E> channelGroupField
javax.swing.JComboBox<E> channelField
YouScopeClient client
YouScopeServer server
boolean channelGroupChanging
java.util.ArrayList<E> actionListeners
javax.swing.JPopupMenu componentChooser
java.util.HashMap<K,V> elements
java.util.ArrayList<E> actionListeners
org.youscope.uielements.ComponentComboBox.Element selectedElement
boolean customTextIcon
int popupLocation
int numChoices
java.awt.event.ActionListener elementSelectionListener
javax.swing.JEditorPane descriptionPane
java.lang.String text
java.lang.String header
boolean isHTML
java.util.Vector<E> actionListeners
javax.swing.JTable table
org.youscope.uielements.DeviceSettingsPanel.DeviceTableModel model
java.util.Vector<E> settings
YouScopeClient client
YouScopeServer server
boolean onlyAbsoluteSettings
javax.swing.JButton deleteSettingButton
javax.swing.JButton newDeviceSettingButton
javax.swing.JButton downButton
javax.swing.JButton upButton
javax.swing.text.NumberFormatter numberFormatter
java.awt.GridBagLayout layout
javax.swing.JComboBox<E> focusDeviceField
IntegerTextField adjustmentTimeField
YouScopeClient client
YouScopeServer server
javax.swing.JLabel messageLabel
javax.swing.JProgressBar waitbar
int messageWidth
int messageHeight
boolean showWaitbar
boolean waitbarIndeterminate
int[][] bins
javax.swing.JPanel leftComponent
javax.swing.JPanel centerComponent
javax.swing.JPanel rightComponent
javax.swing.JSplitPane rightSplitPane
javax.swing.JSplitPane leftSplitPane
boolean autoAdjusting
double lowerAdjustmentCuttoff
double upperAdjustmentCuttoff
double min
double max
boolean dividerActualizing
java.util.ArrayList<E> actionListeners
ImageEvent<T> orgImageEvent
java.awt.image.BufferedImage orgBufferedImage
ImageEvent<T> lastDrawnOrgImageEvent
java.awt.image.BufferedImage lastDrawnOrgBufferedImage
java.awt.image.BufferedImage lastDrawnRenderedImage
java.awt.image.BufferedImage renderedImage
java.lang.Object imageLock
HistogramPlot histogram
org.youscope.uielements.ImagePanel.ControlsPanel controlsPanel
YouScopeClient client
java.lang.String noImageText
long VISIBILITY_TIMEOUT
org.youscope.uielements.ImagePanel.HideTimer hideTimer
boolean userChoosesAutoAdjustContrast
java.awt.Point startLine
java.awt.Point endLine
boolean autoAdjustContrast
double zoom
double centerX
double centerY
org.youscope.uielements.ImagePanel.UserListener userListener
java.lang.String title
java.util.ArrayList<E> pixelListeners
java.util.ArrayList<E> lineListeners
org.youscope.uielements.ImagePanel.HistogramControl histogramControl
java.util.ArrayList<E> controlsList
YouScopeFrame frame
org.youscope.uielements.ImagePanel.LineInfoPopup lineInfoPopup
javax.swing.JPopupMenu imageOptionsPopupMenu
int x1
int y1
int x2
int y2
int x
int y
long value
double relativeValue
javax.swing.text.NumberFormatter numberFormatter
javax.swing.JList<E> jobList
ComponentComboBox<C extends Configuration> newJobField
java.util.Vector<E> jobs
java.lang.String rawText
boolean hoover
java.util.Vector<E> listeners
YouScopeClient client
YouScopeServer server
LiveStreamPanel.ChannelControl channelControl
org.youscope.uielements.LiveStreamPanel.StartStopControl startStopControl
java.lang.Object measurementControlLock
Measurement measurement
org.youscope.uielements.LiveStreamPanel.ImageHandler imageHandler
boolean streamRunning
java.lang.Object fullScreenLock
javax.swing.JFrame fullScreenFrame
boolean fullScreenOn
boolean autostart
CameraField cameraField
ChannelField channelField
DoubleTextField exposureField
IntegerTextField imagingPeriodField
java.util.ArrayList<E> actionListeners
javax.swing.JFormattedTextField durationField
TimeUnit[] units
javax.swing.JComboBox<E> unitField
int lastValidUnitIdx
java.util.Vector<E> periodVaryingData
int periodVaryingPause
org.youscope.uielements.PeriodVaryingPanel.PeriodVaryingDataModel periodVaryingDataModel
javax.swing.JTable periodVaryingDataTable
javax.swing.ImageIcon addButtonIcon
javax.swing.ImageIcon deleteButtonIcon
javax.swing.ImageIcon upButtonIcon
javax.swing.ImageIcon downButtonIcon
java.awt.Component addonConfigurationPanel
ComponentAddonUI<C extends Configuration> currentAddon
YouScopeClient client
YouScopeFrame frame
java.util.ArrayList<E> actionListeners
Configuration initialConfiguration
ComponentComboBox<C extends Configuration> componentBox
java.lang.Class<T> configurationType
javax.swing.JLabel label
java.lang.String text
boolean active
int BOX_SIZE
java.awt.Component addonConfigurationPanel
ComponentAddonUI<C extends Configuration> currentAddon
java.lang.Class<T> configurationClass
YouScopeClient client
YouScopeFrame frame
Configuration lastConfiguration
java.util.ArrayList<E> actionListeners
ComponentComboBox<C extends Configuration> componentBox
JobsDefinitionPanel jobPanel
javax.swing.JLabel periodLabel
PeriodField periodField
PeriodField firstEvaluationField
javax.swing.JRadioButton stopByUserRadio
javax.swing.JRadioButton stopByExecutionsRadio
javax.swing.JLabel numExecutionsFieldLabel
javax.swing.JFormattedTextField numExecutionsField
javax.swing.JRadioButton burstRadio
javax.swing.JRadioButton dynamicPeriodRadio
javax.swing.JRadioButton fixedPeriodRadio
javax.swing.JRadioButton varyingPeriodRadio
PeriodVaryingPanel periodVaryingDataPanel
YouScopeFrame parentFrame
YouScopeClient client
javax.swing.JList<E> taskList
java.util.ArrayList<E> tasks
YouScopeFrame frame
YouScopeClient client
YouScopeServer server
org.youscope.uielements.scripteditor.ScriptEditorPane scriptPane
javax.swing.undo.UndoManager undoManager
java.util.ArrayList<E> undoRedoListeners