- main(String[]) - Static method in class org.json.Test
-
Entry point.
- main(String[]) - Static method in class org.youscope.documentation.converter.Converter
-
- main(String[]) - Static method in class org.youscope.server.YouScopeServerImpl
-
- main(String[]) - Static method in class org.youscope.starter.Starter
-
Main method.
- makeImage(ChannelInternal, double, int) - Method in interface org.youscope.addon.microscopeaccess.CameraDeviceInternal
-
Makes an image with the given settings.
- makeImage(String, String, double) - Method in interface org.youscope.common.microscope.CameraDevice
-
Makes an image with the given settings.
- makeParallelImages(ChannelInternal, String[], double[], int) - Method in interface org.youscope.addon.microscopeaccess.CameraDeviceInternal
-
Deprecated.
- makeParallelImages(String, String, String[], double[]) - Method in interface org.youscope.common.microscope.CameraDevice
-
Deprecated.
- marshal(Object, HierarchicalStreamWriter, MarshallingContext) - Method in class org.youscope.plugin.microplatemeasurement.FineConfigurationConverter
-
- MatlabConnectionException - Exception in org.youscope.plugin.matlabscripting
-
Exception that represents a failure to launch and connect to MATLAB.
- MatlabConnectionListener - Interface in org.youscope.plugin.matlabscripting
-
Implement this interface to be informed when a remote connection has been established or lost.
- MatlabConnector - Class in org.youscope.plugin.matlabscripting
-
This class is called on from MATLAB.
- MatlabFunctionCreator - Class in org.youscope.addon.celldetection.utils
-
Function converting a Matlab script file stored as a resource inside a jar file into a function, and stores this function
as a temporary file such that it can be called normally.
- MatlabFunctionCreator(String, String...) - Constructor for class org.youscope.addon.celldetection.utils.MatlabFunctionCreator
-
Constructor.
- MatlabInternalException - Exception in org.youscope.plugin.matlabscripting
-
A wrapper around com.mathworks.jmi.MatlabException so that the exception can be sent over RMI
without needing the jmi.jar to be included by the developer, but still prints identically.
- MatlabInternalProxy - Interface in org.youscope.plugin.matlabscripting
-
- MatlabInternalProxyReceiver - Interface in org.youscope.plugin.matlabscripting
-
Implement this interface to receive a MatlabInternalProxy.
- MatlabInvocationException - Exception in org.youscope.plugin.matlabscripting
-
Exception that represents a failure to invoke a method on the MATLAB session.
- MatlabScoresAddonFactory - Class in org.youscope.plugin.matlabfocusscores
-
- MatlabScoresAddonFactory() - Constructor for class org.youscope.plugin.matlabfocusscores.MatlabScoresAddonFactory
-
Constructor.
- MatlabScoresConfiguration - Class in org.youscope.plugin.matlabfocusscores
-
- MatlabScoresConfiguration() - Constructor for class org.youscope.plugin.matlabfocusscores.MatlabScoresConfiguration
-
Constructor.
- MatlabScoreType - Enum in org.youscope.plugin.matlabfocusscores
-
- MatlabScriptEngine - Class in org.youscope.plugin.matlabscripting
-
- MatlabScriptEngine() - Constructor for class org.youscope.plugin.matlabscripting.MatlabScriptEngine
-
Creates a new Matlab script engine.
- MatlabScriptEngineFactory - Class in org.youscope.plugin.matlabscripting
-
- MatlabScriptEngineFactory() - Constructor for class org.youscope.plugin.matlabscripting.MatlabScriptEngineFactory
-
- MatlabScriptStyle - Class in org.youscope.common.scripting
-
Script style for Matlab scripts.
- MatlabScriptStyle() - Constructor for class org.youscope.common.scripting.MatlabScriptStyle
-
Constructor.
- MAX_PHASE_SHIFT - Static variable in class org.youscope.plugin.slimjob.SlimJobConfiguration
-
Maximal phase shift value
- MeasuredWellsAndPositionsConverter - Class in org.youscope.plugin.microplatemeasurement
-
XML converter for measured well and position array
- MeasuredWellsAndPositionsConverter() - Constructor for class org.youscope.plugin.microplatemeasurement.MeasuredWellsAndPositionsConverter
-
- Measurement - Interface in org.youscope.common.measurement
-
Represents a measurement a microscope should do.
- MeasurementAddonFactory - Interface in org.youscope.addon.measurement
-
- MeasurementAddonFactoryAdapter - Class in org.youscope.addon.measurement
-
Adapter simplifying addon creation.
- MeasurementAddonFactoryAdapter(Class<? extends ComponentAddonUI<C>>, MeasurementInitializer<C>, ComponentMetadata<C>) - Constructor for class org.youscope.addon.measurement.MeasurementAddonFactoryAdapter
-
Constructor.
- MeasurementAddonFactoryAdapter() - Constructor for class org.youscope.addon.measurement.MeasurementAddonFactoryAdapter
-
Constructor.
- MeasurementAddonUIAdapter<T extends MeasurementConfiguration> - Class in org.youscope.addon.measurement
-
A panel to display and edit several pages of a measurement configuration.
- MeasurementAddonUIAdapter(ComponentMetadata<T>, YouScopeClient, YouScopeServer) - Constructor for class org.youscope.addon.measurement.MeasurementAddonUIAdapter
-
Constructor.
- MeasurementAddonUIPage<T extends MeasurementConfiguration> - Class in org.youscope.addon.measurement
-
Abstract page class for the standard YouScope measurement configuration layout.
- MeasurementAddonUIPage() - Constructor for class org.youscope.addon.measurement.MeasurementAddonUIPage
-
- MeasurementConfiguration - Class in org.youscope.common.measurement
-
Superclass of all configurations of measurements.
- MeasurementConfiguration() - Constructor for class org.youscope.common.measurement.MeasurementConfiguration
-
- MeasurementContext - Interface in org.youscope.common
-
Handed over to measurement components upon initialization, execution and uninitialization.
- MeasurementException - Exception in org.youscope.common.measurement
-
Exception thrown by a measurement to indicate that its initialization, execution or deinitialization failed.
- MeasurementException(String) - Constructor for exception org.youscope.common.measurement.MeasurementException
-
Constructor.
- MeasurementException(Throwable) - Constructor for exception org.youscope.common.measurement.MeasurementException
-
Constructor.
- MeasurementException(String, Throwable) - Constructor for exception org.youscope.common.measurement.MeasurementException
-
Constructor.
- measurementFinished() - Method in interface org.youscope.common.measurement.MeasurementListener
-
Function gets invoked when the measurement has stoped execution.
- MeasurementInitializer<C extends MeasurementConfiguration> - Interface in org.youscope.addon.measurement
-
Interface which has to be implemented if the creation of a component, given its configuration, should be done
differently from the default mechanism.
- measurementInitializing() - Method in interface org.youscope.common.measurement.MeasurementListener
-
Function gets invoked when the measurement is initializing.
- MeasurementListener - Interface in org.youscope.common.measurement
-
A listener which gets notified about the progress of a measurement.
- MeasurementProvider - Interface in org.youscope.serverinterfaces
-
A class being able to construct new measurements.
- measurementQueueChanged() - Method in interface org.youscope.common.microscope.MicroscopeStateListener
-
Thrown when the queue of measurements changed.
- measurementQueued() - Method in interface org.youscope.common.measurement.MeasurementListener
-
Function gets invoked when the measurement is queued and will be activated as soon as the
microscope is free.
- MeasurementRunningException - Exception in org.youscope.common.measurement
-
Exception thrown if a measurement component should be changed while measurement is running.
- MeasurementRunningException() - Constructor for exception org.youscope.common.measurement.MeasurementRunningException
-
Constructor.
- MeasurementRunningException(String) - Constructor for exception org.youscope.common.measurement.MeasurementRunningException
-
Constructor.
- MeasurementSaver - Interface in org.youscope.common.saving
-
Interface providing functionality to set and determine the way images and meta information of a measurement are saved
to the file system.
- measurementStarted() - Method in interface org.youscope.common.measurement.MeasurementListener
-
Function gets invoked when the measurement starts execution.
- MeasurementState - Enum in org.youscope.common.measurement
-
- measurementStructureModified() - Method in interface org.youscope.common.measurement.MeasurementListener
-
Function gets invoked when the structure of a measurement is modified during the execution of the measurement.
- MeasurementTask - Interface in org.youscope.common.task
-
Interface represents a task.
- measurementUninitializing() - Method in interface org.youscope.common.measurement.MeasurementListener
-
Function gets invoked when the measurement is uninitializing.
- measurementUnqueued() - Method in interface org.youscope.common.measurement.MeasurementListener
-
Function is invoked when measurement is removed from the queue without being stated
- MeasurementViewerFactory - Class in org.youscope.plugin.measurementviewer
-
- MeasurementViewerFactory() - Constructor for class org.youscope.plugin.measurementviewer.MeasurementViewerFactory
-
Constructor.
- MeasurementViewerPostProcessingFactory - Class in org.youscope.plugin.measurementviewer
-
- MeasurementViewerPostProcessingFactory() - Constructor for class org.youscope.plugin.measurementviewer.MeasurementViewerPostProcessingFactory
-
- MessageListener - Interface in org.youscope.common
-
Interface to allow an object to send messages, e.g.
- Microplate - Interface in org.youscope.common.measurement.microplate
-
Structural properties of a microplate, like number and sizes of wells.
- MicroplateAddonFactory - Interface in org.youscope.addon.microplate
-
Factory to create layouts of microplates, i.e.
- MicroplateConfiguration - Class in org.youscope.common.measurement.microplate
-
Configuration of structural properties of a microplate, like number and sizes of wells.
- MicroplateConfiguration() - Constructor for class org.youscope.common.measurement.microplate.MicroplateConfiguration
-
Default constructor.
- MicroplateConfiguration(Microplate) - Constructor for class org.youscope.common.measurement.microplate.MicroplateConfiguration
-
Constructor for a predefined microplate type.
- MicroplateConfiguration(int, int, double, double) - Constructor for class org.youscope.common.measurement.microplate.MicroplateConfiguration
-
Constructor for a custom defined microplate.
- MicroplateConfiguration(int) - Constructor for class org.youscope.common.measurement.microplate.MicroplateConfiguration
-
Constructor for a microplate type, when no microplate is used, but the functionality of the microplate
measurement methods should be used for custom positions.
- MicroplateJobAddonFactory - Class in org.youscope.plugin.microplatejob
-
- MicroplateJobAddonFactory() - Constructor for class org.youscope.plugin.microplatejob.MicroplateJobAddonFactory
-
Constructor.
- MicroplateJobConfiguration - Class in org.youscope.plugin.microplatejob
-
This class represents the configuration of a user configurable microplate job.
- MicroplateJobConfiguration() - Constructor for class org.youscope.plugin.microplatejob.MicroplateJobConfiguration
-
- MicroplateJobConfigurationAddon - Class in org.youscope.plugin.microplatejob
-
- MicroplateJobConfigurationAddon(YouScopeClient, YouScopeServer) - Constructor for class org.youscope.plugin.microplatejob.MicroplateJobConfigurationAddon
-
Constructor.
- MicroplateMeasurementAddonFactory - Class in org.youscope.plugin.microplatemeasurement
-
- MicroplateMeasurementAddonFactory() - Constructor for class org.youscope.plugin.microplatemeasurement.MicroplateMeasurementAddonFactory
-
Constructor.
- MicroplateMeasurementConfiguration - Class in org.youscope.plugin.microplatemeasurement
-
This class represents the configuration of a user configurable microtiter
plate measurement.
- MicroplateMeasurementConfiguration() - Constructor for class org.youscope.plugin.microplatemeasurement.MicroplateMeasurementConfiguration
-
- MicroplateMeasurementInitializer - Class in org.youscope.plugin.microplatemeasurement
-
- MicroplateMeasurementInitializer() - Constructor for class org.youscope.plugin.microplatemeasurement.MicroplateMeasurementInitializer
-
- MicroplatePositionConfiguration - Class in org.youscope.plugin.microplatemeasurement
-
Configuration of the positions to measure in a microplate measurement.
- MicroplatePositionConfiguration() - Constructor for class org.youscope.plugin.microplatemeasurement.MicroplatePositionConfiguration
-
Default constructor.
- MicroplatePositionConfiguration(Microplate) - Constructor for class org.youscope.plugin.microplatemeasurement.MicroplatePositionConfiguration
-
Constructor for a predefined microplate type.
- MicroplatePositionConfiguration(int, int, double, double) - Constructor for class org.youscope.plugin.microplatemeasurement.MicroplatePositionConfiguration
-
Constructor for a custom defined microplate.
- MicroplatePositionConfiguration(int) - Constructor for class org.youscope.plugin.microplatemeasurement.MicroplatePositionConfiguration
-
Constructor for a microplate type, when no microplate is used, but the functionality of the microplate
measurement methods should be used for custom positions.
- Microscope - Interface in org.youscope.common.microscope
-
This interface represents the microscope and allows access to its devices, its configuration and
its camera.
- microscope - Variable in class org.youscope.plugin.microscopeaccess.PropertyImpl
-
- MicroscopeConfiguration - Interface in org.youscope.common.microscope
-
- MicroscopeConfigurationException - Exception in org.youscope.common.microscope
-
Exception thrown when a microscope configuration file contained errors.
- MicroscopeConfigurationException(Exception, String, int) - Constructor for exception org.youscope.common.microscope.MicroscopeConfigurationException
-
Constructor used when line number of error is known.
- MicroscopeConfigurationException(Exception) - Constructor for exception org.youscope.common.microscope.MicroscopeConfigurationException
-
Constructor used when line number of error is unknown.
- MicroscopeConfigurationInternal - Interface in org.youscope.addon.microscopeaccess
-
- MicroscopeConfigurationListener - Interface in org.youscope.common.microscope
-
Listener which gets notified if a device of the microscope was removed or its configuration modified.
- MicroscopeConnectionException - Exception in org.youscope.addon.microscopeaccess
-
- MicroscopeConnectionException(String) - Constructor for exception org.youscope.addon.microscopeaccess.MicroscopeConnectionException
-
Constructor.
- MicroscopeConnectionException(String, Throwable) - Constructor for exception org.youscope.addon.microscopeaccess.MicroscopeConnectionException
-
Constructor.
- MicroscopeConnectionFactory - Interface in org.youscope.addon.microscopeaccess
-
This interface is intended to be implemented by plug-ins to establish a connection to the microscope drivers.
- MicroscopeConnectionFactoryImpl - Class in org.youscope.plugin.microscopeaccess
-
- MicroscopeConnectionFactoryImpl() - Constructor for class org.youscope.plugin.microscopeaccess.MicroscopeConnectionFactoryImpl
-
- MicroscopeDriverException - Exception in org.youscope.common.microscope
-
Exception thrown when having problems with the drivers of the microscope.
- MicroscopeDriverException(String) - Constructor for exception org.youscope.common.microscope.MicroscopeDriverException
-
Constructor.
- MicroscopeDriverException(String, Exception) - Constructor for exception org.youscope.common.microscope.MicroscopeDriverException
-
Constructor.
- MicroscopeException - Exception in org.youscope.common.microscope
-
Class representing an exception which occurred in the execution of some microscope tasks.
- MicroscopeException(String) - Constructor for exception org.youscope.common.microscope.MicroscopeException
-
Constructor.
- MicroscopeException(String, Exception) - Constructor for exception org.youscope.common.microscope.MicroscopeException
-
Constructor.
- MicroscopeInternal - Interface in org.youscope.addon.microscopeaccess
-
Internal interface of the microscope.
- MicroscopeLockedException - Exception in org.youscope.common.microscope
-
- MicroscopeLockedException() - Constructor for exception org.youscope.common.microscope.MicroscopeLockedException
-
Default constructor, indicating that the microscope is locked.
- MicroscopeLockedException(String) - Constructor for exception org.youscope.common.microscope.MicroscopeLockedException
-
Constructor.
- MicroscopeScriptException - Exception in org.youscope.common.scripting
-
- MicroscopeScriptException(String, Exception) - Constructor for exception org.youscope.common.scripting.MicroscopeScriptException
-
Constructor.
- MicroscopeScriptException(String) - Constructor for exception org.youscope.common.scripting.MicroscopeScriptException
-
Constructor.
- MicroscopeScriptException() - Constructor for exception org.youscope.common.scripting.MicroscopeScriptException
-
Constructor.
- MicroscopeStateListener - Interface in org.youscope.common.microscope
-
- microscopeUninitialized() - Method in interface org.youscope.common.microscope.MicroscopeConfigurationListener
-
Called when the microscope is uninitialized.
- MIN_PHASE_SHIFT - Static variable in class org.youscope.plugin.slimjob.SlimJobConfiguration
-
Minimal phase shift value
- mode - Variable in class org.json.JSONWriter
-
The current mode.
- model - Variable in class org.youscope.uielements.CellSelectionTable
-
- more() - Method in class org.json.JSONTokener
-
Determine if the source string still contains characters that next()
can consume.
- MultiCameraAndColorStreamFactory - Class in org.youscope.plugin.multicameraandcolorstream
-
- MultiCameraAndColorStreamFactory() - Constructor for class org.youscope.plugin.multicameraandcolorstream.MultiCameraAndColorStreamFactory
-
Constructor.
- MultiCameraContinousImagingAddonFactory - Class in org.youscope.plugin.multicameracontinuousimaging
-
- MultiCameraContinousImagingAddonFactory() - Constructor for class org.youscope.plugin.multicameracontinuousimaging.MultiCameraContinousImagingAddonFactory
-
Constructor.
- MultiCameraContinousImagingConfiguration - Class in org.youscope.plugin.multicameracontinuousimaging
-
This class represents the configuration of a user configurable measurement.
- MultiCameraContinousImagingConfiguration() - Constructor for class org.youscope.plugin.multicameracontinuousimaging.MultiCameraContinousImagingConfiguration
-
- MultiCameraContinousImagingInitializer - Class in org.youscope.plugin.multicameracontinuousimaging
-
- MultiCameraContinousImagingInitializer() - Constructor for class org.youscope.plugin.multicameracontinuousimaging.MultiCameraContinousImagingInitializer
-
- MultiColorStreamFactory - Class in org.youscope.plugin.multicolorstream
-
- MultiColorStreamFactory() - Constructor for class org.youscope.plugin.multicolorstream.MultiColorStreamFactory
-
Constructor.
- MultiStreamFactory - Class in org.youscope.plugin.multicamerastream
-
- MultiStreamFactory() - Constructor for class org.youscope.plugin.multicamerastream.MultiStreamFactory
-
Constructor.
- MultiStreamPanel - Class in org.youscope.plugin.multicolorstream
-