- read(char[], int, int) - Method in class org.youscope.common.util.RMIReader
-
- ReadOnlyProperty - Interface in org.youscope.common.microscope
-
- ReadOnlyPropertyInternal - Interface in org.youscope.addon.microscopeaccess
-
- reconnect() - Method in interface org.youscope.plugin.onix.OnixAddon
-
Reconnects to the device.
- redo() - Method in class org.youscope.uielements.scripteditor.ScriptEditor
-
Redoes the last action which was undone, if available.
- registerControl(String, MatlabInternalProxy) - Method in interface org.youscope.plugin.matlabscripting.MatlabInternalProxyReceiver
-
Called by Matlab to establish a new connection.
- registerJob(LiveModifiableJob) - Method in interface org.youscope.plugin.livemodifiablejob.LiveModifiableJobCallback
-
Registers a job to be modifiable by the UI.
- REGISTRY_NAME - Static variable in class org.youscope.client.YouScopeClientImpl
-
The name under which the server object registers itself in the registry.
- REGISTRY_PORT - Static variable in class org.youscope.client.YouScopeClientImpl
-
The port the server object registers to.
- REGISTRY_PORT - Static variable in class org.youscope.server.YouScopeServerImpl
-
The standard port for this server.
- REGISTRY_PORT - Static variable in class org.youscope.starter.Starter
-
The standard port the server object registers to.
- RegularPeriodConfiguration - Class in org.youscope.common.task
-
Configurations of how often and when a task should be executed.
- RegularPeriodConfiguration() - Constructor for class org.youscope.common.task.RegularPeriodConfiguration
-
- relocateFrameTo(YouScopeFrame) - Method in interface org.youscope.clientinterfaces.YouScopeFrame
-
Relocates all calls to this object's functions to the corresponding functions of the target frame.
- RemoteMatlabProxy - Class in org.youscope.plugin.matlabscripting
-
Allows for calling MATLAB from outside of MATLAB.
- RemoteMatlabProxyController - Class in org.youscope.plugin.matlabscripting
-
- RemoteMatlabProxyFactory - Class in org.youscope.plugin.matlabscripting
-
- RemoteMatlabProxyFactory() - Constructor for class org.youscope.plugin.matlabscripting.RemoteMatlabProxyFactory
-
- RemoteScriptEngine - Interface in org.youscope.common.scripting
-
- RemoteScriptEngineFactory - Class in org.youscope.plugin.scripting
-
Factory to create remote script engines as callbacks.
- RemoteScriptEngineFactory() - Constructor for class org.youscope.plugin.scripting.RemoteScriptEngineFactory
-
- remove(String) - Method in class org.json.JSONObject
-
Remove a name and its value, if present.
- removeActionListener(ActionListener) - Method in interface org.youscope.addon.component.generic.PropertyEditor
-
Removes a previously added listener.
- removeActionListener(ActionListener) - Method in class org.youscope.addon.component.generic.PropertyEditorAdapter
-
- removeActionListener(ActionListener) - Method in class org.youscope.client.uielements.DefaultQuickLoggerModel
-
- removeActionListener(ActionListener) - Method in interface org.youscope.client.uielements.QuickLoggerModel
-
Removes a previously added listener.
- removeActionListener(ActionListener) - Method in class org.youscope.uielements.CameraField
-
Removes a previously added Action listener.
- removeActionListener(ActionListener) - Method in class org.youscope.uielements.ChannelField
-
Removes a previously added Action listener.
- removeActionListener(ActionListener) - Method in class org.youscope.uielements.ComponentComboBox
-
- removeActionListener(ActionListener) - Method in class org.youscope.uielements.DeviceSettingsPanel
-
Removes a previously added listener.
- removeActionListener(ActionListener) - Method in class org.youscope.uielements.FocusField
-
Removes a previously added Action listener.
- removeActionListener(ActionListener) - Method in class org.youscope.uielements.HistogramPlot
-
Removes a previously added listener.
- removeActionListener(ActionListener) - Method in class org.youscope.uielements.LinkLabel
-
Removes a previously added listener.
- removeActionListener(ActionListener) - Method in class org.youscope.uielements.LiveStreamPanel.ChannelControl
-
Removes a previously added listener.
- removeActionListener(ActionListener) - Method in class org.youscope.uielements.PeriodField
-
Removes a previously added action listener.
- removeActionListener(ActionListener) - Method in class org.youscope.uielements.SubConfigurationPanel
-
Removes a previously added listener.
- removeCallbackListener(UserControlMeasurementCallbackListener) - Method in interface org.youscope.plugin.usercontrolmeasurement.UserControlMeasurementCallback
-
Removes a previously added listener.
- removeCellSelectionListener(CellSelectionTable.CellSelectionListener) - Method in class org.youscope.uielements.CellSelectionTable
-
Removes a previously added listener.
- removeChannel(String, String) - Method in interface org.youscope.common.microscope.ChannelManager
-
Removes the channel in the given channel group.
- removeClientFinishListener(ActionListener) - Method in class org.youscope.client.YouScopeClientImpl
-
Removes a previously added listener.
- removeConfigurationListener(MicroscopeConfigurationListener) - Method in interface org.youscope.addon.microscopeaccess.MicroscopeInternal
-
Removes a previously added listener
- removeConfigurationListener(MicroscopeConfigurationListener) - Method in interface org.youscope.common.microscope.Microscope
-
Removes a previously added listener
- removeConfigurationListener(ComponentAddonUIListener<? super T>) - Method in class org.youscope.plugin.microplatejob.JobConfigurationPanel
-
Removes a previously added listener.
- removeConnectionListener(MatlabConnectionListener) - Method in class org.youscope.plugin.matlabscripting.RemoteMatlabProxyFactory
-
Removes a listener so that it is no longer notified.
- removeControl(int) - Method in class org.youscope.uielements.ImagePanel
-
Removes the control at the given index.
- removeControl(Component) - Method in class org.youscope.uielements.ImagePanel
-
Removes a previously added control.
- removeControlImageListener(ImageListener) - Method in interface org.youscope.plugin.lifecelldetection.CellDetectionJob
-
Removes a previously added image listener.
- removeDevice(String, int) - Method in interface org.youscope.addon.microscopeaccess.DeviceLoaderInternal
-
Removes a previously added device.
- removeDevice(String) - Method in interface org.youscope.common.microscope.DeviceLoader
-
Removes a previously added device.
- removeFrameListener(YouScopeFrameListener) - Method in class org.youscope.addon.AddonUIAdapter
-
Removes a previously added listener.
- removeFrameListener(YouScopeFrameListener) - Method in interface org.youscope.clientinterfaces.YouScopeFrame
-
Removes a previously added listener.
- removeImageListener(ImageListener) - Method in interface org.youscope.common.image.ImageProducer
-
Removes a previously added image listener.
- removeImageSynchronizationDevice(String, int) - Method in interface org.youscope.addon.microscopeaccess.MicroscopeConfigurationInternal
-
Removes the given device to the list of image synchronization devices.
- removeImageSynchronizationDevice(String) - Method in interface org.youscope.common.microscope.MicroscopeConfiguration
-
Removes the given device to the list of image synchronization devices.
- removeItemListener(ItemListener) - Method in class org.youscope.uielements.ChannelField
-
Removes a previously added listener.
- removeJob(Job) - Method in interface org.youscope.common.job.EditableJobContainer
-
Removes a previously added job.
- removeJob(Job) - Method in class org.youscope.common.job.EditableJobContainerAdapter
-
- removeJobAt(int) - Method in interface org.youscope.common.job.JobContainerConfiguration
-
Removes the job at the given index.
- removeJobAt(int) - Method in class org.youscope.common.task.TaskConfiguration
-
- removeJobAt(int) - Method in class org.youscope.plugin.autofocus.AutoFocusJobConfiguration
-
- removeJobAt(int) - Method in class org.youscope.plugin.composedimaging.PlateScanningJobConfiguration
-
- removeJobAt(int) - Method in class org.youscope.plugin.composedimaging.StaggeringJobConfiguration
-
- removeJobAt(int) - Method in class org.youscope.plugin.compositejob.CompositeJobConfiguration
-
- removeJobAt(int) - Method in class org.youscope.plugin.customjob.CustomJobConfiguration
-
- removeJobAt(int) - Method in class org.youscope.plugin.deviceslides.DeviceSlidesJobConfiguration
-
- removeJobAt(int) - Method in class org.youscope.plugin.lifecelldetection.CellDetectionJobConfiguration
-
- removeJobAt(int) - Method in class org.youscope.plugin.livemodifiablejob.LiveModifiableJobConfiguration
-
- removeJobAt(int) - Method in class org.youscope.plugin.microplatejob.MicroplateJobConfiguration
-
- removeJobAt(int) - Method in class org.youscope.plugin.microplatemeasurement.MicroplateMeasurementConfiguration
-
- removeJobAt(int) - Method in class org.youscope.plugin.repeatjob.RepeatJobConfiguration
-
- removeJobAt(int) - Method in class org.youscope.plugin.scriptingjob.ScriptingJobConfiguration
-
- removeJobAt(int) - Method in class org.youscope.plugin.simplemeasurement.SimpleMeasurementConfiguration
-
- removeJobAt(int) - Method in class org.youscope.plugin.statistics.StatisticsJobConfiguration
-
- removeJobAt(int) - Method in class org.youscope.plugin.waitjob.ExecuteAndWaitJobConfiguration
-
- removeJobAt(int) - Method in class org.youscope.plugin.zslides.ZSlidesJobConfiguration
-
- removeJobListener(JobListener) - Method in interface org.youscope.common.job.Job
-
Removes a previously added listener.
- removeJobListener(JobListener) - Method in class org.youscope.common.job.JobAdapter
-
- removeLineListener(ImagePanel.LineListener) - Method in class org.youscope.uielements.ImagePanel
-
Removes a previously added line listener.
- removeMeasurementListener(MeasurementListener) - Method in interface org.youscope.common.measurement.Measurement
-
Removes a previously added listener.
- removeMessageListener(MessageListener) - Method in interface org.youscope.addon.component.generic.PropertyEditor
-
Removes a previously added listener
- removeMessageListener(MessageListener) - Method in class org.youscope.addon.component.generic.PropertyEditorAdapter
-
- removeMessageListener(MessageListener) - Method in interface org.youscope.addon.microscopeaccess.MicroscopeInternal
-
Removes a previously added listener.
- removeMessageListener(MessageListener) - Method in interface org.youscope.common.Component
-
Removes a previously added listener.
- removeMessageListener(MessageListener) - Method in class org.youscope.common.job.JobAdapter
-
- removeMessageListener(MessageListener) - Method in interface org.youscope.common.microscope.Microscope
-
Removes a previously added listener.
- removeMessageListener(MessageListener) - Method in class org.youscope.common.resource.ResourceAdapter
-
- removeMessageListener(MessageListener) - Method in interface org.youscope.plugin.onix.OnixAddon
-
Removes a previously added listener.
- removeMessageListener(MessageListener) - Method in class org.youscope.server.YouScopeServerImpl
-
- removeMessageListener(MessageListener) - Method in interface org.youscope.serverinterfaces.YouScopeServer
-
Removes a previously added listener.
- removePixelListener(ImagePanel.PixelListener) - Method in class org.youscope.uielements.ImagePanel
-
Removes a previously added pixel listener.
- removePixelSize(String) - Method in interface org.youscope.common.microscope.PixelSizeManager
-
Removes the pixel size setting with the given ID.
- removeRow(int) - Method in class org.youscope.common.table.Table
-
Removes the row at the given index.
- removeSegmentationImageListener(ImageListener) - Method in interface org.youscope.plugin.lifecelldetection.CellDetectionJob
-
Removes a previously added image listener.
- removeServerFinishListener(ActionListener) - Method in class org.youscope.server.YouScopeServerImpl
-
Removes a previously added listener.
- removeSizeChangeListener(ActionListener) - Method in class org.youscope.addon.measurement.MeasurementAddonUIPage
-
Removes a previously added listener.
- removeSizeChangeListener(ActionListener) - Method in class org.youscope.plugin.microplatejob.JobConfigurationPage
-
Removes a previously added listener.
- removeSizeChangeListener(ActionListener) - Method in class org.youscope.plugin.microplatejob.JobConfigurationPanel
-
Removes a previously added listener.
- removeStateListener(MicroscopeStateListener) - Method in class org.youscope.server.YouScopeServerImpl
-
- removeStateListener(MicroscopeStateListener) - Method in interface org.youscope.serverinterfaces.YouScopeServer
-
Removes a previously added listener.
- removeTableListener(TableListener) - Method in interface org.youscope.common.table.TableProducer
-
Removes a previously added listener.
- removeTask(int) - Method in interface org.youscope.common.task.TaskContainerConfiguration
-
Removes the task at the given index.
- removeTask(int) - Method in class org.youscope.plugin.taskmeasurement.TaskMeasurementConfiguration
-
- removeTaskListener(TaskListener) - Method in interface org.youscope.common.task.MeasurementTask
-
Removes a previously added listener.
- removeTransferListener(OpenBISListener) - Method in interface org.youscope.plugin.openbis.OpenBISAddon
-
Removes a previously added listener.
- removeTransferListener(OpenBISListener) - Method in class org.youscope.plugin.openbis.OpenBISAddonImpl
-
- removeUIListener(ComponentAddonUIListener<? super C>) - Method in interface org.youscope.addon.component.ComponentAddonUI
-
Removes a previously added listener.
- removeUIListener(ComponentAddonUIListener<? super C>) - Method in class org.youscope.addon.component.ComponentAddonUIAdapter
-
- removeUndoRedoListener(UndoRedoListener) - Method in class org.youscope.uielements.scripteditor.ScriptEditor
-
Removes a previously added listener.
- removeWellPositionsChangeListener(ActionListener) - Method in class org.youscope.plugin.microplatemeasurement.WellPositionsTable
-
Removes a previously added listener.
- removeWellsChangeListener(ActionListener) - Method in class org.youscope.plugin.microplatemeasurement.WellTable
-
Removes a previously added listener.
- RepeatJob - Interface in org.youscope.plugin.repeatjob
-
A job which consists of other jobs, which gets executed several times when the repeat job is executed.
- RepeatJobAddonFactory - Class in org.youscope.plugin.repeatjob
-
- RepeatJobAddonFactory() - Constructor for class org.youscope.plugin.repeatjob.RepeatJobAddonFactory
-
Constructor.
- RepeatJobConfiguration - Class in org.youscope.plugin.repeatjob
-
A job consisting of other jobs, which are repeated for a certain amount of times.
- RepeatJobConfiguration() - Constructor for class org.youscope.plugin.repeatjob.RepeatJobConfiguration
-
- requestProxy() - Method in class org.youscope.plugin.matlabscripting.RemoteMatlabProxyFactory
-
Requests a proxy.
- resetEmergencyStop() - Method in interface org.youscope.addon.microscopeaccess.MicroscopeInternal
-
Resets the emergency-stop state, such that microscope can be accessed
again.
- resetEmergencyStop() - Method in interface org.youscope.common.microscope.Microscope
-
Resets the emergency-stop state, such that microscope can be accessed
again.
- resetEmergencyStop() - Method in class org.youscope.server.YouScopeServerImpl
-
- resetEmergencyStop() - Method in interface org.youscope.serverinterfaces.YouScopeServer
-
Resets the emergency-stop state, such that microscope can be accessed again.
- Resource - Interface in org.youscope.common.resource
-
A resource is some configurable object which can be used by jobs during a measurement.
- ResourceAdapter<C extends ResourceConfiguration> - Class in org.youscope.common.resource
-
Adapter to simplify resource creation.
- ResourceAdapter(PositionInformation, ResourceConfiguration, String, Class<C>, String) - Constructor for class org.youscope.common.resource.ResourceAdapter
-
Constructor.
- ResourceConfiguration - Class in org.youscope.common.resource
-
Base class of all configurations of measurement resources.
- ResourceConfiguration() - Constructor for class org.youscope.common.resource.ResourceConfiguration
-
- ResourceException - Exception in org.youscope.common.resource
-
Exception thrown by resources.
- ResourceException(String) - Constructor for exception org.youscope.common.resource.ResourceException
-
Constructor.
- ResourceException(String, Throwable) - Constructor for exception org.youscope.common.resource.ResourceException
-
Constructor.
- ResourceException - Exception in org.youscope.plugin.fluigent
-
Exception thrown if error occurs in the communication with the Fluigent device.
- ResourceException(String) - Constructor for exception org.youscope.plugin.fluigent.ResourceException
-
Constructor.
- ResourceException(Throwable) - Constructor for exception org.youscope.plugin.fluigent.ResourceException
-
Constructor.
- ResourceException(String, Throwable) - Constructor for exception org.youscope.plugin.fluigent.ResourceException
-
Constructor.
- returningEval(String, int) - Static method in class org.youscope.plugin.matlabscripting.LocalMatlabProxy
-
Evaluates a command in MATLAB.
- returningEval(String, int) - Method in interface org.youscope.plugin.matlabscripting.MatlabInternalProxy
-
Evaluates a command in MATLAB.
- returningEval(String, int) - Method in class org.youscope.plugin.matlabscripting.RemoteMatlabProxy
-
Evaluates a command in MATLAB.
- returningEval(String, int) - Static method in class org.youscope.plugin.matlabscripting.RemoteMatlabProxyController
-
Evaluates a command in MATLAB.
- returningFeval(String, Object[]) - Static method in class org.youscope.plugin.matlabscripting.LocalMatlabProxy
-
Calls a MATLAB function with the name functionName.
- returningFeval(String, Object[], int) - Static method in class org.youscope.plugin.matlabscripting.LocalMatlabProxy
-
Calls a MATLAB function with the name functionName.
- returningFeval(String, Object[]) - Method in interface org.youscope.plugin.matlabscripting.MatlabInternalProxy
-
Calls a MATLAB function with the name functionName.
- returningFeval(String, Object[], int) - Method in interface org.youscope.plugin.matlabscripting.MatlabInternalProxy
-
Calls a MATLAB function with the name functionName.
- returningFeval(String, Object[]) - Method in class org.youscope.plugin.matlabscripting.RemoteMatlabProxy
-
Calls a MATLAB function with the name functionName.
- returningFeval(String, Object[], int) - Method in class org.youscope.plugin.matlabscripting.RemoteMatlabProxy
-
Calls a MATLAB function with the name functionName.
- returningFeval(String, Object[]) - Static method in class org.youscope.plugin.matlabscripting.RemoteMatlabProxyController
-
Calls a MATLAB function with the name functionName.
- returningFeval(String, Object[], int) - Static method in class org.youscope.plugin.matlabscripting.RemoteMatlabProxyController
-
Calls a MATLAB function with the name functionName.
- revalidate() - Method in class org.youscope.uielements.CellSelectionTable
-
- RMIReader - Class in org.youscope.common.util
-
- RMIReader(Reader) - Constructor for class org.youscope.common.util.RMIReader
-
Constructor.
- RMIWriter - Class in org.youscope.common.util
-
- RMIWriter(Writer) - Constructor for class org.youscope.common.util.RMIWriter
-
Constructor.
- rotateClockwise() - Method in class org.youscope.plugin.livestream.ContinousMeasurementPanel
-
Rotates the image clockwise.
- rotateClockwise() - Method in class org.youscope.plugin.multicolorstream.MultiStreamPanel
-
Rotates the image clockwise.
- rotateCounterClockwise() - Method in class org.youscope.plugin.livestream.ContinousMeasurementPanel
-
Rotates the image counter clockwise.
- rotateCounterClockwise() - Method in class org.youscope.plugin.multicolorstream.MultiStreamPanel
-
Rotates the image counter clockwise.
- rowHeader - Variable in class org.youscope.uielements.CellSelectionTable
-
- RowHeaderListModel() - Constructor for class org.youscope.uielements.CellSelectionTable.RowHeaderListModel
-
- rowToJSONArray(JSONTokener) - Static method in class org.json.CDL
-
Produce a JSONArray of strings from a row of comma delimited values.
- rowToJSONObject(JSONArray, JSONTokener) - Static method in class org.json.CDL
-
Produce a JSONObject from a row of comma delimited text, using a
parallel JSONArray of strings to provides the names of the elements.
- rowToString(JSONArray) - Static method in class org.json.CDL
-
Produce a comma delimited text row from a JSONArray.
- RowView - Interface in org.youscope.common.table
-
Represents a view on a row of a graph.
- run() - Method in class org.youscope.plugin.openbis.OpenBISAddonImpl
-
Does updata the state of this addon based on the progress of rsync.
- runAutofocus(FocusSearchOracle) - Method in interface org.youscope.addon.focussearch.FocusSearchResource
-
Runs the focus score algorithm using the given oracle to determine the focus scores.
- runController(ExecutionInformation, MeasurementContext, double) - Method in interface org.youscope.addon.dropletmicrofluidics.DropletControllerResource
-
Runs the controller and returns the flow rates of the flow units (i.e.
- runFullFocus(int) - Method in interface org.youscope.addon.microscopeaccess.AutoFocusDeviceInternal
-
Runs a full focus search.
- runFullFocus() - Method in interface org.youscope.common.microscope.AutoFocusDevice
-
Runs a full focus search.
- runIncrementalFocus(int) - Method in interface org.youscope.addon.microscopeaccess.AutoFocusDeviceInternal
-
Runs an incremental focus search.
- runIncrementalFocus() - Method in interface org.youscope.common.microscope.AutoFocusDevice
-
Runs an incremental focus search.
- runJob(ExecutionInformation, Microscope, MeasurementContext) - Method in class org.youscope.common.job.JobAdapter
-
Convenient function which gets called by executeJob().
- runObserver(ExecutionInformation, MeasurementContext, double) - Method in interface org.youscope.addon.dropletmicrofluidics.DropletObserverResource
-
Runs the observer and returns the estimated droplet heights.
- runProtocol(RMIReader) - Method in interface org.youscope.plugin.onix.OnixAddon
-
Runs a standard CellAsic Onix protocol, utilizing the given reader (e.g.
- runProtocolAndWait(RMIReader) - Method in interface org.youscope.plugin.onix.OnixAddon
-
Runs a standard CellAsic Onix protocol, utilizing the given reader (e.g.