S-Index

A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

S

saveConfiguration(String, Configuration) - Static method in class org.youscope.addon.ConfigurationManagement: Saves given configuration under given file name.
saveConfiguration(RMIWriter) - Method in interface org.youscope.common.microscope.Microscope: Writes the current microscope configuration to the supplied writer (e.g.
saveData(T) - Method in class org.youscope.addon.measurement.MeasurementAddonUIPage: Saves the configuration data.
saveData(MeasurementConfiguration) - Method in class org.youscope.addon.measurement.pages.DescriptionPage
saveData(MeasurementConfiguration) - Method in class org.youscope.addon.measurement.pages.GeneralSettingsPage
saveData(MeasurementConfiguration) - Method in class org.youscope.addon.measurement.pages.StartAndEndSettingsPage
saveData(T) - Method in class org.youscope.plugin.microplatejob.JobConfigurationPage: Saves the configuration data.
saveMicroplateTypeDefinition(Microplate) - Static method in class org.youscope.plugin.custommicroplates.CustomMicroplatesManager: Saves a given microplate type.
SaveSettings - Interface in org.youscope.common.saving: Configuration of the folder structure defining how measurement data should be saved.
saveSettings() - Method in class org.youscope.uielements.LiveStreamPanel: Call this function such that the current channel settings get saved.
SaveSettingsConfiguration - Class in org.youscope.common.saving: Subclasses of this abstract class represent the configuration of a folder structure into which measurement data should be stored into.
SaveSettingsConfiguration() - Constructor for class org.youscope.common.saving.SaveSettingsConfiguration
saveToConfiguration(MicroplatePositionConfiguration) - Method in class org.youscope.plugin.microplatemeasurement.WellPositionsTable: Saves the settings into the configuration object.
saveToConfiguration(MicroplatePositionConfiguration) - Method in class org.youscope.plugin.microplatemeasurement.WellTable: Saves the settings into the configuration object.
SCRIPT_ENGINE_TIMETABLE - Static variable in class org.youscope.plugin.fluigent.FluigentJobConfiguration: Script engine name representing that the script to control the syringes is a simple time-table, for which an own interpreter is written.
SCRIPT_ENGINE_TIMETABLE - Static variable in class org.youscope.plugin.nemesys.NemesysJobConfiguration: Script engine name representing that the script to control the syringes is a simple time-table, for which an own interpreter is written.
ScriptEditor - Class in org.youscope.uielements.scripteditor: An editor to edit script files of various types.
ScriptEditor() - Constructor for class org.youscope.uielements.scripteditor.ScriptEditor: Constructor.
ScriptImageStorage - Interface in org.youscope.common.scripting
ScriptingJob - Interface in org.youscope.common.job.basicjobs: A scripting job executes a script every time it runs, and-depending on the script-its child jobs.
ScriptingJobAddonFactory - Class in org.youscope.plugin.scriptingjob
ScriptingJobAddonFactory() - Constructor for class org.youscope.plugin.scriptingjob.ScriptingJobAddonFactory: Constructor.
ScriptingJobConfiguration - Class in org.youscope.plugin.scriptingjob
ScriptingJobConfiguration() - Constructor for class org.youscope.plugin.scriptingjob.ScriptingJobConfiguration
ScriptingToolFactory - Class in org.youscope.plugin.scripting
ScriptingToolFactory() - Constructor for class org.youscope.plugin.scripting.ScriptingToolFactory: Constructor.
ScriptInterface - Interface in org.youscope.common.scripting
ScriptStyle - Interface in org.youscope.common.scripting: Definition of how a script is rendered.
SelectableProperty - Interface in org.youscope.common.microscope
SelectablePropertyInternal - Interface in org.youscope.addon.microscopeaccess
selectAllCells() - Method in class org.youscope.uielements.CellSelectionTable: Selects all cells
selectedCells - Variable in class org.youscope.plugin.microplatemeasurement.WellTable
SelectionListener() - Constructor for class org.youscope.uielements.CellSelectionTable.SelectionListener
sendCommand(String, int) - Method in interface org.youscope.addon.microscopeaccess.SerialDeviceInternal: Sends a serial command to the corresponding port
sendCommand(String) - Method in interface org.youscope.common.microscope.SerialDevice: Sends a serial command to the corresponding port
sendCommand(String, int) - Method in class org.youscope.plugin.microscopeaccess.SerialDeviceImpl: Sends a serial command to the corresponding port
sendError(String, Throwable) - Method in interface org.youscope.clientinterfaces.YouScopeClient: Notifies the client that an error occurred, such that the client can notify the user in the client specific way.
sendError(String) - Method in interface org.youscope.clientinterfaces.YouScopeClient: Notifies the client that an error occurred, such that the client can notify the user in the client specific way.
sendErrorMessage(String, Throwable) - Method in class org.youscope.addon.AddonUIAdapter: Call this function to notify that an error occurred.
sendErrorMessage(String, Throwable) - Method in class org.youscope.addon.component.generic.PropertyEditorAdapter: Sends an error message to all message listener.
sendErrorMessage(String, Throwable) - Method in class org.youscope.common.job.JobAdapter
sendErrorMessage(String, Throwable) - Method in interface org.youscope.common.MessageListener: Sends an error message to the listener.
sendErrorMessage(String, Throwable) - Method in class org.youscope.common.resource.ResourceAdapter: Sends an error message to all registered listeners.
sendMessage(String) - Method in class org.youscope.addon.AddonUIAdapter: Send a general message meant for information.
sendMessage(String) - Method in class org.youscope.addon.component.generic.PropertyEditorAdapter: Sends a message to all message listeners.
sendMessage(String) - Method in interface org.youscope.clientinterfaces.YouScopeClient: Sends a human readable message to the client, which (may) be displayed to the user in the client specific way.
sendMessage(String) - Method in class org.youscope.common.job.JobAdapter: Sends the given message to all output writers.
sendMessage(String) - Method in interface org.youscope.common.MessageListener: Sends a message to the listener.
sendMessage(String) - Method in class org.youscope.common.resource.ResourceAdapter: Sends a message to all registered listeners.
SerialDevice - Interface in org.youscope.common.microscope
SerialDeviceImpl - Class in org.youscope.plugin.microscopeaccess
SerialDeviceInternal - Interface in org.youscope.addon.microscopeaccess
ServerAddon - Interface in org.youscope.addon.serveraddon: An addon with specialized functionality which cannot be adequately represented by the other mechanisms of YouScope.
setAbsolute(boolean) - Method in class org.youscope.plugin.changepositionjob.ChangePositionJobConfiguration
setAbsoluteValue(boolean) - Method in class org.youscope.common.microscope.DeviceSetting: Set to true if the property should be set to the given value, and to false if it should be changed for an offset relative to the current value.
setActive(boolean) - Method in class org.youscope.uielements.StateButton: Sets if the button is active.
setAdjustmentTime(int) - Method in class org.youscope.common.configuration.FocusConfiguration
setAdjustmentTime(int) - Method in class org.youscope.uielements.FocusField: Sets the currently selected focus adjustment time in ms.
setAllowEditsWhileRunning(boolean) - Method in class org.youscope.plugin.microplatemeasurement.MicroplateMeasurementConfiguration: Set to true to allow the measurement to be edited while running.
setAllowEditsWhileRunning(boolean) - Method in class org.youscope.plugin.simplemeasurement.SimpleMeasurementConfiguration: Set to true to allow the measurement to be edited while running.
setAttenuationFactor(double) - Method in class org.youscope.plugin.slimjob.SlimProperties: Sets the attenuation factor.
setAutoAdjustContrast(boolean) - Method in class org.youscope.uielements.ImagePanel: Sets if the contrast should be automatically adjusted whenever a new image is set.
setAutoAdjusting(boolean) - Method in class org.youscope.uielements.HistogramPlot: Sets if the lower and upper cuttoffs are adjusting automatically.
setAutoAdjustmentCuttoffs(double, double) - Method in class org.youscope.uielements.HistogramPlot: Sets the amount of pixels (in percent) which is set to black (lowerAdjustmentCuttoff) and white (upperAdjustmentCuttoff) in the auto-adjustment algorithm.
setAutofocusConfiguration(AutoFocusJobConfiguration) - Method in class org.youscope.plugin.dropletmicrofluidics.DropletMicrofluidicJobConfiguration: Sets the configuration for the autofocus.
setAutoFocusDevice(String, int) - Method in interface org.youscope.addon.microscopeaccess.MicroscopeInternal: Sets the default auto-focus device.
setAutoFocusDevice(String) - Method in interface org.youscope.common.microscope.Microscope: Sets the default auto-focus device.
setAutoStartStream(boolean) - Method in class org.youscope.uielements.LiveStreamPanel: If set to true, the stream automatically starts when the window is made visible.
setBands(int) - Method in class org.youscope.common.image.ImageEvent: Sets the number of bands (colors in image).
setBaseFolder(String) - Method in class org.youscope.plugin.standardsavesettings.StandardSaveSettingsConfiguration: Sets the folder where all measurements should be saved.
setBins(int[][]) - Method in class org.youscope.uielements.HistogramPlot: Sets the histogram data.
setBreakTime(int) - Method in class org.youscope.common.task.VaryingPeriodConfiguration: Sets an additional time which should be waited after iterating through all periods.
setBrightFieldOpacity(double) - Method in class org.youscope.plugin.multicolorstream.MultiStreamPanel
setBurstImaging(boolean) - Method in interface org.youscope.common.job.basicjobs.ContinuousImagingJob: Sets if the images are produced in burst mode.
setBurstImaging(boolean) - Method in class org.youscope.plugin.continousimaging.ContinuousImagingJobConfiguration: Sets if the images are produced in burst mode.
setBurstImaging(boolean) - Method in interface org.youscope.plugin.continousimaging.ShortContinuousImagingJob: Sets if the images are produced in burst mode.
setCamera(String) - Method in class org.youscope.common.image.ImageEvent: Set the name of the camera with which the image was taken.
setCamera(String) - Method in interface org.youscope.common.job.basicjobs.ContinuousImagingJob: Sets the camera with which it should be imaged.
setCamera(String) - Method in interface org.youscope.common.job.basicjobs.ImagingJob: Sets the camera with which it should be imaged.
setCamera(CameraConfiguration) - Method in class org.youscope.plugin.continousimaging.ContinuousImagingJobConfiguration: Sets the camera with which should be imaged.
setCamera(String) - Method in interface org.youscope.plugin.continousimaging.ShortContinuousImagingJob: Sets the camera with which it should be imaged.
setCamera(CameraConfiguration) - Method in class org.youscope.plugin.continousimaging.ShortContinuousImagingJobConfiguration: Sets the camera with which should be imaged.
setCamera(String) - Method in class org.youscope.plugin.imagingjob.ImagingJobConfiguration: Sets the camera with which should be imaged.
setCamera(String) - Method in class org.youscope.plugin.livestream.ContinousMeasurementPanel: Sets the camera with which it should be imaged.
setCamera(String) - Method in class org.youscope.plugin.slimjob.SlimJobConfiguration: Sets the camera with which should be imaged.
setCamera(String) - Method in class org.youscope.uielements.CameraField: Sets the currently chosen camera
setCamera(CameraConfiguration) - Method in class org.youscope.uielements.CameraField: Sets the currently selected camera.
setCamera(FocusConfiguration) - Method in class org.youscope.uielements.FocusField: Sets the currently selected focus configuration.
setCameraConfiguration(CameraConfiguration) - Method in class org.youscope.plugin.imagingjob.ImagingJobConfiguration: Sets the configuration of the camera.
setCameraDevice(String, int) - Method in interface org.youscope.addon.microscopeaccess.MicroscopeInternal: Sets the current default camera device.
setCameraDevice(String) - Method in class org.youscope.common.configuration.CameraConfiguration: Set the camera device name, or null to use the default camera device.
setCameraDevice(String) - Method in interface org.youscope.common.microscope.Microscope: Sets the current default camera device.
setCameraDevice(String) - Method in class org.youscope.plugin.composedimaging.ComposedImagingJobConfiguration: Sets the camera device used for imaging.
setCameraDevice(String) - Method in class org.youscope.plugin.composedimaging.ComposedImagingMeasurementConfiguration: Sets the camera device used for imaging.
setCameras(String[]) - Method in interface org.youscope.common.job.basicjobs.ContinuousImagingJob: Sets the cameras with which it should be imaged.
setCameras(String[]) - Method in interface org.youscope.common.job.basicjobs.ImagingJob: Sets the cameras with which it should be imaged.
setCameras(String[]) - Method in interface org.youscope.plugin.composedimaging.ComposedImagingJob: Sets the cameras with which it should be imaged.
setCameras(String[]) - Method in interface org.youscope.plugin.continousimaging.ShortContinuousImagingJob: Sets the cameras with which it should be imaged.
setCameras(String[]) - Method in class org.youscope.plugin.multicameracontinuousimaging.MultiCameraContinousImagingConfiguration
setCameras(String[]) - Method in class org.youscope.plugin.multicamerajob.ParallelImagingJobConfiguration
setCellTableSaveName(String) - Method in class org.youscope.plugin.lifecelldetection.CellDetectionJobConfiguration: Sets the name under which the cell-table should be saved.
setChannel(String) - Method in class org.youscope.common.configuration.ChannelConfiguration: Sets the name of the channel.
setChannel(String, String) - Method in class org.youscope.common.configuration.ChannelConfiguration: Sets the channel and channel group names.
setChannel(String) - Method in class org.youscope.common.image.ImageEvent: Sets the channel in which the image was made.
setChannel(String, String) - Method in interface org.youscope.common.job.basicjobs.ContinuousImagingJob: Sets the channel.
setChannel(String, String) - Method in interface org.youscope.common.job.basicjobs.ImagingJob: Sets the channel.
setChannel(String, String) - Method in interface org.youscope.plugin.autofocus.AutoFocusJob: Sets the channel.
setChannel(String, String) - Method in class org.youscope.plugin.autofocus.AutoFocusJobConfiguration: Sets the channel which should be imaged.
setChannel(String, String) - Method in interface org.youscope.plugin.composedimaging.ComposedImagingJob: Sets the channel.
setChannel(String, String) - Method in class org.youscope.plugin.composedimaging.ComposedImagingJobConfiguration: Sets the channel in which the images should be made.
setChannel(String, String) - Method in class org.youscope.plugin.composedimaging.ComposedImagingMeasurementConfiguration: Sets the channel for imaging.
setChannel(String, String) - Method in class org.youscope.plugin.continousimaging.ContinousImagingMeasurementConfiguration: The channel where the images should be made.
setChannel(ChannelConfiguration) - Method in class org.youscope.plugin.continousimaging.ContinuousImagingJobConfiguration: The channel where the images should be made.
setChannel(String, String) - Method in interface org.youscope.plugin.continousimaging.ShortContinuousImagingJob: Sets the channel.
setChannel(ChannelConfiguration) - Method in class org.youscope.plugin.continousimaging.ShortContinuousImagingJobConfiguration: The channel where the images should be made.
setChannel(String, String) - Method in class org.youscope.plugin.imagingjob.ImagingJobConfiguration: Sets the channel and channel group in which should be imaged.
setChannel(String, String) - Method in class org.youscope.plugin.lifecelldetection.CellDetectionMeasurementConfiguration: The channel where the images should be made.
setChannel(String, String) - Method in class org.youscope.plugin.livestream.ContinousMeasurementPanel: Sets the channel in which it is imaged.
setChannel(String, String) - Method in class org.youscope.plugin.multicameracontinuousimaging.MultiCameraContinousImagingConfiguration: The channel where the images should be made.
setChannel(String, String) - Method in class org.youscope.plugin.multicamerajob.ParallelImagingJobConfiguration: Sets the channel which should be imaged.
setChannel(int, String, String) - Method in class org.youscope.plugin.multicolorstream.MultiStreamPanel: Sets the channel in which it is imaged.
setChannel(String, String) - Method in interface org.youscope.plugin.outoffocus.OutOfFocusJob: Sets the channel.
setChannel(String, String) - Method in class org.youscope.plugin.outoffocus.OutOfFocusJobConfiguration: Sets the channel which should be imaged.
setChannel(String, String) - Method in class org.youscope.plugin.slimjob.SlimJobConfiguration: Sets the channel which should be imaged.
setChannel(String, String) - Method in class org.youscope.uielements.ChannelField: Sets the currently chosen channel
setChannel(ChannelConfiguration) - Method in class org.youscope.uielements.ChannelField: Sets the currently selected channel configuration.
setChannelConfiguration(ChannelConfiguration) - Method in class org.youscope.plugin.imagingjob.ImagingJobConfiguration: Sets the channel configuration.
setChannelGroup(String) - Method in class org.youscope.common.configuration.ChannelConfiguration: Sets the name of the channel group.
setChannelGroup(String) - Method in class org.youscope.common.image.ImageEvent: Sets the channel group in which the image was made.
setChannelOffSettings(DeviceSetting[]) - Method in interface org.youscope.common.microscope.Channel: Sets all device settings which get set if this channel is deactivated.
setChannelOnSettings(DeviceSetting[]) - Method in interface org.youscope.common.microscope.Channel: Sets all device settings which get set if this channel is activated.
setChannelTimeout(int) - Method in interface org.youscope.common.microscope.Channel: Sets a timeout when changing the channel for synchronization purposes.
setChildJobConfigurations(JobConfiguration[]) - Method in interface org.youscope.plugin.livemodifiablejob.LiveModifiableJob: Sets the configurations of the child jobs.
setClosable(boolean) - Method in interface org.youscope.clientinterfaces.YouScopeFrame: Sets if the frame is closable by the user (i.e.
setCloseButtonLabel(String) - Method in class org.youscope.addon.AddonUIAdapter: Sets the label of the commit button which is displayed at the bottom of a frame, when initialized as a frame.
setCommunicationPingPeriod(int, int) - Method in interface org.youscope.addon.microscopeaccess.MicroscopeConfigurationInternal: Sets the wait time used when pinging a device if a certain action is finished.
setCommunicationPingPeriod(int) - Method in interface org.youscope.common.microscope.MicroscopeConfiguration: Sets the wait time used when pinging a device if a certain action is finished.
setCommunicationTimeout(int, int) - Method in interface org.youscope.addon.microscopeaccess.MicroscopeConfigurationInternal: Sets the timeout between in the communication with the devices.
setCommunicationTimeout(int) - Method in interface org.youscope.common.microscope.MicroscopeConfiguration: Sets the timeout between in the communication with the devices.
setConfiguration(Configuration) - Method in interface org.youscope.addon.component.ComponentAddonUI: Initializes the addon to the configuration data.
setConfiguration(Configuration) - Method in class org.youscope.addon.component.ComponentAddonUIAdapter
setConfiguration(MeasurementConfiguration) - Method in interface org.youscope.common.saving.MeasurementSaver: Sets the configuration of the measurement.
setConfiguration(Configuration) - Method in class org.youscope.plugin.microplatejob.MicroplateJobConfigurationAddon
setConfiguration(C) - Method in class org.youscope.uielements.SubConfigurationPanel: Sets the current configuration.
setConfigurationData(T) - Method in class org.youscope.plugin.microplatejob.JobConfigurationPanel: Sets the configuration of the job which should be configured.
setConfigurationData(TaskConfiguration) - Method in class org.youscope.uielements.TaskConfigurationPanel: Initializes the frame to the configuration data.
setConfigurationFile(String) - Method in class org.youscope.plugin.cellx.CellXConfiguration: Sets the path to the file which contains the configuration settings for the CellX algorithm.
setConfigureMicroscopeConnection(boolean) - Method in class org.youscope.server.YouScopeServerImpl: If true, sets the YouScope server to ask for the microscope connection the next time.
setContentPane(Component) - Method in interface org.youscope.clientinterfaces.YouScopeFrame: Sets the content pane of this frame.
setControlImageSaveName(String) - Method in class org.youscope.plugin.lifecelldetection.CellDetectionJobConfiguration: Sets the name under which the control image should be saved.
setController(DropletControllerResource) - Method in interface org.youscope.plugin.dropletmicrofluidics.DropletMicrofluidicJob: Sets the control algorithm used to correct droplet heights by changing inflow or outflow.
setControllerConfiguration(DropletControllerConfiguration) - Method in class org.youscope.plugin.dropletmicrofluidics.DropletMicrofluidicJobConfiguration: Sets the configuration of the controll algorithm.
setControllerScript(String) - Method in interface org.youscope.plugin.controller.ControllerJob: Sets the script for the controller which gets evaluated by the script engine.
setControllerScript(String) - Method in class org.youscope.plugin.controller.ControllerJobConfiguration: Sets the script of the controller, i.e.
setControllerScriptEngine(String) - Method in interface org.youscope.plugin.controller.ControllerJob: Sets the script engine with which the scripts should be evaluated.
setControllerScriptEngine(String) - Method in class org.youscope.plugin.controller.ControllerJobConfiguration: Sets the name of the script engine with which the controller script should be executed.
setControllerTableSaveName(String) - Method in class org.youscope.plugin.controller.ControllerJobConfiguration: Sets the name of the file (without file extension) under which the input/output data of the controller should be saved.
setCorrectByOutflow(boolean) - Method in class org.youscope.plugin.dropletmicrofluidics.tablecontroller.TableControllerConfiguration: True if droplet height is corrected by varying outflow, false if varying inflow.
setCreationTime(long) - Method in class org.youscope.common.image.ImageEvent: Sets the time milliseconds since January 1, 1970, 00:00:00 GMT when the image was created (see Date.getTime()).
setCreationTime(long) - Method in class org.youscope.common.table.Table: Sets the time in milliseconds after January 1, 1970 00:00:00 GMT, when the content of this table was created.
setCutoff(float, float) - Method in class org.youscope.plugin.livestream.ContinousMeasurementPanel: Sets the lower and the upper cutoff, if the contrast is increased.
setCutoff(int, float, float) - Method in class org.youscope.plugin.multicolorstream.MultiStreamPanel: Sets the lower and the upper cutoff, if the contrast is increased.
setDeltaX(double) - Method in interface org.youscope.plugin.composedimaging.ComposedImagingJob: Sets the distance between two horizontally attached sub-images.
setDeltaX(double) - Method in interface org.youscope.plugin.composedimaging.PlateScanningJob: Sets the distance between two horizontally attached sub-images.
setDeltaX(double) - Method in class org.youscope.plugin.composedimaging.PlateScanningJobConfiguration
setDeltaX(double) - Method in interface org.youscope.plugin.composedimaging.StaggeringJob: Sets the distance between two horizontally attached sub-images.
setDeltaX(double) - Method in class org.youscope.plugin.composedimaging.StaggeringJobConfiguration
setDeltaY(double) - Method in interface org.youscope.plugin.composedimaging.ComposedImagingJob: Sets the distance between two vertically attached sub-images.
setDeltaY(double) - Method in interface org.youscope.plugin.composedimaging.PlateScanningJob: Sets the distance between two vertically attached sub-images.
setDeltaY(double) - Method in class org.youscope.plugin.composedimaging.PlateScanningJobConfiguration
setDeltaY(double) - Method in interface org.youscope.plugin.composedimaging.StaggeringJob: Sets the distance between two vertically attached sub-images.
setDeltaY(double) - Method in class org.youscope.plugin.composedimaging.StaggeringJobConfiguration
setDescription(String) - Method in class org.youscope.addon.AddonUIAdapter: Sets a description for this addon.
setDetectionAlgorithm(CellDetectionAddon) - Method in interface org.youscope.plugin.lifecelldetection.CellDetectionJob: Sets the algorithm which should be used for cell detection.
setDetectionAlgorithmConfiguration(CellDetectionConfiguration) - Method in class org.youscope.plugin.lifecelldetection.CellDetectionJobConfiguration: Sets the configuration of the cell detection algorithm to use.
setDetectionAlgorithmConfiguration(CellDetectionConfiguration) - Method in class org.youscope.plugin.lifecelldetection.CellDetectionMeasurementConfiguration: Sets the configuration of the cell detection algorithm to use.
setDetectionJob(JobConfiguration) - Method in class org.youscope.plugin.lifecelldetection.CellDetectionJobConfiguration: Sets the job which should be used to create the image which is used to detect the cells.
setDetectionThreshold(double) - Method in class org.youscope.plugin.quickdetect.QuickDetectConfiguration: Sets the detection threshold (0-1) of the algorithm.
setDevice(String) - Method in class org.youscope.plugin.oscillatinginput.OscillatingDeviceJobConfiguration
setDeviceProperty(String, String) - Method in class org.youscope.common.microscope.DeviceSetting: Sets the device property which this setting represents.
setDeviceSettings(DeviceSetting[]) - Method in interface org.youscope.common.job.basicjobs.DeviceSettingJob: Sets the device settings made when job runs.
setDeviceSettings(DeviceSetting...) - Method in class org.youscope.plugin.devicejob.DeviceJobConfiguration: Sets the device settings which should be activated by the job.
setDeviceSettingsOff(DeviceSetting[]) - Method in class org.youscope.plugin.onoffdevicejob.OnOffDeviceJobConfiguration
setDeviceSettingsOn(DeviceSetting[]) - Method in class org.youscope.plugin.onoffdevicejob.OnOffDeviceJobConfiguration
setDeviseSettingsOff(DeviceSetting[]) - Method in class org.youscope.common.measurement.MeasurementConfiguration
setDeviseSettingsOn(DeviceSetting[]) - Method in class org.youscope.common.measurement.MeasurementConfiguration
setDimension(int, int) - Method in class org.youscope.uielements.CellSelectionTable: Sets the number of columns and rows of the table.
setDrawCellInformation(boolean) - Method in class org.youscope.plugin.labelvisualizer.LabelVisualizerConfiguration: Set to true to draw information about each detected cell next to the cell.
setDrawIntoOrgImage(boolean) - Method in class org.youscope.plugin.labelvisualizer.LabelVisualizerConfiguration: Sets if the borders of the cells should be drawn into the original image (true), or the shape of the cell into a new image (false).
setDropletTableSaveName(String) - Method in class org.youscope.plugin.dropletmicrofluidics.DropletMicrofluidicJobConfiguration: Sets the file name (without extension) under which the droplet table should be saved.
setDuration(int) - Method in class org.youscope.uielements.PeriodField: Sets the duration in ms.
setDuration(long) - Method in class org.youscope.uielements.PeriodField: Sets the duration in ms.
setEchoEval(boolean) - Static method in class org.youscope.plugin.matlabscripting.LocalMatlabProxy: Allows for enabling a diagnostic mode that will show in MATLAB each time a Java method that calls into MATLAB is invoked.
setEchoEval(boolean) - Method in interface org.youscope.plugin.matlabscripting.MatlabInternalProxy: Allows for enabling a diagnostic mode that will show in MATLAB each time a Java method that calls into MATLAB is invoked.
setEchoEval(boolean) - Method in class org.youscope.plugin.matlabscripting.RemoteMatlabProxy: Allows for enabling a diagnostic mode that will show in MATLAB each time a Java method that calls into MATLAB is invoked.
setEchoEval(boolean) - Static method in class org.youscope.plugin.matlabscripting.RemoteMatlabProxyController: Allows for enabling a diagnostic mode that will show in MATLAB each time a Java method that calls into MATLAB is invoked.
setEditable(boolean) - Method in class org.youscope.uielements.DeviceSettingsPanel: Sets if the UI elements in this panel react on user input.
setEnabled(boolean, int) - Method in interface org.youscope.addon.microscopeaccess.AutoFocusDeviceInternal: Enables or disables the auto-focus device.
setEnabled(boolean) - Method in interface org.youscope.common.microscope.AutoFocusDevice: Enables or disables the auto-focus device.
setEnabled(boolean) - Method in interface org.youscope.plugin.livemodifiablejob.LiveModifiableJob: Set to true if the child jobs should be executed during the next execution of this job, and to false otherwise.
setEnabledAtStartup(boolean) - Method in class org.youscope.plugin.livemodifiablejob.LiveModifiableJobConfiguration: set if job is enabled at startup.
setErrorInLine(int) - Method in class org.youscope.uielements.scripteditor.ScriptEditor: Marks that in the given line number an error occurred.
setExecutionInformation(ExecutionInformation) - Method in class org.youscope.common.image.ImageEvent: Sets the information of how often the image producing job was already executed when producing the image.
setExecutionInformation(ExecutionInformation) - Method in class org.youscope.common.table.Table: Sets logical information of when during the measurement execution the table was created.
setExplicitDelay(double, int) - Method in interface org.youscope.addon.microscopeaccess.DeviceInternal: Sets the explicit delay in ms.
setExplicitDelay(double) - Method in interface org.youscope.common.microscope.Device: Sets the explicit delay in ms.
setExposure(double, int) - Method in interface org.youscope.addon.microscopeaccess.CameraDeviceInternal: Sets the exposure for imaging.
setExposure(double) - Method in interface org.youscope.common.job.basicjobs.ContinuousImagingJob: Sets the exposure.
setExposure(double) - Method in interface org.youscope.common.job.basicjobs.ImagingJob: Sets the exposure.
setExposure(double) - Method in interface org.youscope.common.microscope.CameraDevice: Sets the exposure for imaging.
setExposure(double) - Method in interface org.youscope.plugin.autofocus.AutoFocusJob: Sets the exposure.
setExposure(double) - Method in class org.youscope.plugin.autofocus.AutoFocusJobConfiguration
setExposure(double) - Method in interface org.youscope.plugin.composedimaging.ComposedImagingJob: Sets the exposure.
setExposure(double) - Method in class org.youscope.plugin.composedimaging.ComposedImagingJobConfiguration
setExposure(double) - Method in class org.youscope.plugin.composedimaging.ComposedImagingMeasurementConfiguration: Sets the exposure in ms.
setExposure(double) - Method in class org.youscope.plugin.continousimaging.ContinousImagingMeasurementConfiguration: Sets the exposure time in ms.
setExposure(double) - Method in class org.youscope.plugin.continousimaging.ContinuousImagingJobConfiguration: Sets the exposure time in ms.
setExposure(double) - Method in interface org.youscope.plugin.continousimaging.ShortContinuousImagingJob: Sets the exposure.
setExposure(double) - Method in class org.youscope.plugin.continousimaging.ShortContinuousImagingJobConfiguration: Sets the exposure time in ms.
setExposure(double) - Method in class org.youscope.plugin.imagingjob.ImagingJobConfiguration
setExposure(double) - Method in class org.youscope.plugin.lifecelldetection.CellDetectionMeasurementConfiguration
setExposure(double) - Method in class org.youscope.plugin.livestream.ContinousMeasurementPanel: Sets the exposure time for the continuous imaging.
setExposure(int, double) - Method in class org.youscope.plugin.multicolorstream.MultiStreamPanel: Sets the exposure time for the continuous imaging.
setExposure(double) - Method in class org.youscope.plugin.onoffdevicejob.OnOffDeviceJobConfiguration
setExposure(double) - Method in interface org.youscope.plugin.outoffocus.OutOfFocusJob: Sets the exposure.
setExposure(double) - Method in class org.youscope.plugin.outoffocus.OutOfFocusJobConfiguration
setExposure(double) - Method in class org.youscope.plugin.slimjob.SlimJobConfiguration
setExposures(double[]) - Method in interface org.youscope.common.job.basicjobs.ContinuousImagingJob: Sets the exposures of the cameras.
setExposures(double[]) - Method in interface org.youscope.common.job.basicjobs.ImagingJob: Sets the exposures of the cameras.
setExposures(double[]) - Method in interface org.youscope.plugin.composedimaging.ComposedImagingJob: Sets the exposures of the cameras.
setExposures(double[]) - Method in interface org.youscope.plugin.continousimaging.ShortContinuousImagingJob: Sets the exposures of the cameras.
setExposures(double[]) - Method in class org.youscope.plugin.multicameracontinuousimaging.MultiCameraContinousImagingConfiguration
setExposures(double[]) - Method in class org.youscope.plugin.multicamerajob.ParallelImagingJobConfiguration
setFileName(String) - Method in class org.youscope.plugin.statistics.StatisticsJobConfiguration: Sets the file name where statistical data should be saved.
setFileNameExtension(String) - Method in class org.youscope.uielements.scripteditor.ScriptEditor: Sets the extension of the file name which is displayed.
setFinishDeviceSettings(DeviceSetting[]) - Method in interface org.youscope.common.measurement.Measurement: Sets the device settings which should be applied (once) the measurement ends.
setFixedTimes(boolean) - Method in class org.youscope.common.task.RegularPeriodConfiguration
setFlowRate(int, double) - Method in interface org.youscope.plugin.fluigent.FluigentScriptCallback: Sets the flow rate of a given flow unit.
setFlowRate(int, double) - Method in interface org.youscope.plugin.nemesys.NemesysScriptCallback: Sets the flow rate of a given dosing unit.
setFluigentDevice(String) - Method in class org.youscope.plugin.fluigent.FluigentJobConfiguration: Sets the ID of the Fluigent device which should be controlled.
setFluigentDeviceName(String) - Method in interface org.youscope.plugin.fluigent.FluigentJob: Sets the name of the Fluigent device.
setFocus(double) - Method in class org.youscope.plugin.microplatemeasurement.XYAndFocusPosition: Sets the focus position.
setFocusAdjustmentTime(int) - Method in interface org.youscope.common.job.basicjobs.FocusingJob: Sets the focus adjustment time (the time the microscope is paused after the new focus position was set) in ms.
setFocusAdjustmentTime(int) - Method in interface org.youscope.plugin.autofocus.AutoFocusJob: Sets the focus adjustment time (the time the microscope is paused after the new focus position was set) in ms.
setFocusAdjustmentTime(int) - Method in interface org.youscope.plugin.outoffocus.OutOfFocusJob: Sets the focus adjustment time (the time the microscope is paused after the new focus position was set) in ms.
setFocusConfiguration(FocusConfiguration) - Method in class org.youscope.plugin.autofocus.AutoFocusJobConfiguration
setFocusConfiguration(FocusConfiguration) - Method in class org.youscope.plugin.focusingjob.FocusingJobConfiguration
setFocusConfiguration(FocusConfiguration) - Method in class org.youscope.plugin.microplatejob.MicroplateJobConfiguration
setFocusConfiguration(FocusConfiguration) - Method in class org.youscope.plugin.microplatemeasurement.MicroplateMeasurementConfiguration
setFocusConfiguration(FocusConfiguration) - Method in class org.youscope.plugin.outoffocus.OutOfFocusJobConfiguration
setFocusConfiguration(FocusConfiguration) - Method in class org.youscope.plugin.zslides.ZSlidesJobConfiguration
setFocusDevice(String, int) - Method in interface org.youscope.addon.microscopeaccess.MicroscopeInternal: Sets the default focus device.
setFocusDevice(String) - Method in class org.youscope.common.configuration.FocusConfiguration
setFocusDevice(String) - Method in interface org.youscope.common.job.basicjobs.FocusingJob: Sets the focus device name for which the position should be changed.
setFocusDevice(String) - Method in interface org.youscope.common.microscope.Microscope: Sets the default focus device.
setFocusDevice(String) - Method in interface org.youscope.plugin.autofocus.AutoFocusJob: Sets the focus device name for which the position should be changed.
setFocusDevice(String) - Method in interface org.youscope.plugin.outoffocus.OutOfFocusJob: Sets the focus device name for which the position should be changed.
setFocusDevice(String) - Method in class org.youscope.uielements.FocusField: Sets the currently chosen focus device.
setFocusLowerBound(double) - Method in class org.youscope.plugin.brentfocussearch.BrentFocusSearchConfiguration: Sets the minimal relative focus.
setFocusLowerBound(double) - Method in class org.youscope.plugin.exhaustivefocussearch.ExhaustiveFocusSearchConfiguration: Sets the minimal relative focus.
setFocusPosition(double, int) - Method in interface org.youscope.addon.microscopeaccess.FocusDeviceInternal: Sets the position of the current focus device.
setFocusPosition(double) - Method in interface org.youscope.common.microscope.FocusDevice: Sets the position of the current focus device.
setFocusPosition(double, int) - Method in class org.youscope.plugin.microscopeaccess.FocusDeviceImpl
setFocusScoreAlgorithm(FocusScoreResource) - Method in interface org.youscope.plugin.autofocus.AutoFocusJob: Sets the algorithm with which the score of an image is calculated (i.e.
setFocusScoreAlgorithm(FocusScoreConfiguration) - Method in class org.youscope.plugin.autofocus.AutoFocusJobConfiguration: Sets the focus algorithm with which it is detected if the focus of an image made at a give focus position is better than the other.
setFocusSearchAlgorithm(FocusSearchResource) - Method in interface org.youscope.plugin.autofocus.AutoFocusJob: Sets the algorithm with which it is determined at which focus positions images are made to determine the best focal plane.
setFocusSearchAlgorithm(FocusSearchConfiguration) - Method in class org.youscope.plugin.autofocus.AutoFocusJobConfiguration: sets the focus search algorithm.
setFocusTableSaveName(String) - Method in class org.youscope.plugin.autofocus.AutoFocusJobConfiguration: Sets the name under which the focus-table should be saved.
setFocusUpperBound(double) - Method in class org.youscope.plugin.brentfocussearch.BrentFocusSearchConfiguration: Sets the maximal relative focus.
setFocusUpperBound(double) - Method in class org.youscope.plugin.exhaustivefocussearch.ExhaustiveFocusSearchConfiguration: Sets the maximal relative focus.
setFolderStructureType(FolderStructureType) - Method in class org.youscope.plugin.standardsavesettings.StandardSaveSettingsConfiguration: Sets the type of the standard folder structure.
setFullScreen(boolean) - Method in class org.youscope.uielements.LiveStreamPanel: Set to true to show the LiveStream in full-screen mode.
setGenerateLabelImage(boolean) - Method in class org.youscope.plugin.cellx.CellXConfiguration: Set to true if a label image should be generated.
setGenerateLabelImage(boolean) - Method in class org.youscope.plugin.quickdetect.QuickDetectConfiguration: Set to true if a label image should be generated.
setGlowStrength(double) - Method in class org.youscope.plugin.glowvisualizer.GlowVisualizerConfiguration: Sets the strength in which the cells should be glowing.
setHeader(String) - Method in class org.youscope.uielements.DescriptionPanel: Sets the header for this description.
setHTML(boolean) - Method in class org.youscope.uielements.DescriptionPanel: Sets if the text (not the header) is HTML (true) or plain text (false).
setIcon(Icon) - Method in class org.youscope.uielements.ComponentComboBox
setImage(BufferedImage) - Method in class org.youscope.uielements.ImagePanel: Sets the image which should be displayed.
setImage(ImageEvent<?>) - Method in class org.youscope.uielements.ImagePanel: Sets the image which should be displayed.
setImageBufferSize(int, int) - Method in interface org.youscope.addon.microscopeaccess.MicroscopeConfigurationInternal: Sets the size of an internally used image buffer.
setImageBufferSize(int) - Method in interface org.youscope.common.microscope.MicroscopeConfiguration: Sets the size of an internally used image buffer.
setImageDescription(String) - Method in interface org.youscope.common.job.basicjobs.ContinuousImagingJob: Sets a short string describing the images which are made by this job.
setImageDescription(String) - Method in interface org.youscope.common.job.basicjobs.ImagingJob: Sets a short string describing the images which are made by this job.
setImageDescription(String) - Method in interface org.youscope.plugin.autofocus.AutoFocusJob: Sets a short string describing the images which are made by this job.
setImageDescription(String) - Method in interface org.youscope.plugin.continousimaging.ShortContinuousImagingJob: Sets a short string describing the images which are made by this job.
setImageDescription(String) - Method in interface org.youscope.plugin.lifecelldetection.CellDetectionJob: Sets a short string describing the images which are made by this job.
setImageDescription(String) - Method in interface org.youscope.plugin.outoffocus.OutOfFocusJob: Sets a short string describing the images which are made by this job.
setImageDescription(String) - Method in interface org.youscope.plugin.slimjob.SlimJob: Sets a short string describing the images which are made by this job.
setImageFileName(String) - Method in class org.youscope.plugin.standardsavesettings.StandardSaveSettingsConfiguration
setImageFileType(String) - Method in class org.youscope.plugin.standardsavesettings.StandardSaveSettingsConfiguration
setImageSaveName(String) - Method in class org.youscope.plugin.autofocus.AutoFocusJobConfiguration: Sets the name under which the images should be saved.
setImageSaveName(String) - Method in class org.youscope.plugin.composedimaging.ComposedImagingJobConfiguration: Sets the name under which images of this job should be saved.
setImageSaveName(String) - Method in class org.youscope.plugin.composedimaging.ComposedImagingMeasurementConfiguration: Sets the name under which the images are saved.
setImageSaveName(String) - Method in class org.youscope.plugin.continousimaging.ContinousImagingMeasurementConfiguration: Sets the name under which the images should be saved.
setImageSaveName(String) - Method in class org.youscope.plugin.continousimaging.ContinuousImagingJobConfiguration: Sets the name under which the images should be saved.
setImageSaveName(String) - Method in class org.youscope.plugin.continousimaging.ShortContinuousImagingJobConfiguration: Sets the name under which the images should be saved.
setImageSaveName(String) - Method in class org.youscope.plugin.imagingjob.ImagingJobConfiguration: The name under which the images should be saved.
setImageSaveName(String) - Method in class org.youscope.plugin.lifecelldetection.CellDetectionMeasurementConfiguration: Sets the name under which the image should be saved.
setImageSaveName(String) - Method in class org.youscope.plugin.multicameracontinuousimaging.MultiCameraContinousImagingConfiguration: Sets the name under which the image should be saved.
setImageSaveName(String) - Method in class org.youscope.plugin.multicamerajob.ParallelImagingJobConfiguration: Sets the name under which the image is saved.
setImageSaveName(String) - Method in class org.youscope.plugin.outoffocus.OutOfFocusJobConfiguration: Sets the name under which the images should be saved.
setImageSaveName(String) - Method in class org.youscope.plugin.slimjob.SlimJobConfiguration: Sets the name under which the images should be saved.
setImageSynchronizationDevices(String[], int) - Method in interface org.youscope.addon.microscopeaccess.MicroscopeConfigurationInternal: Sets the devices for which the microscope waits before an image is made.
setImageSynchronizationDevices(String[]) - Method in interface org.youscope.common.microscope.MicroscopeConfiguration: Sets the devices for which the microscope waits before an image is made.
setImagingPeriod(int) - Method in class org.youscope.plugin.continousimaging.ContinousImagingMeasurementConfiguration
setImagingPeriod(int) - Method in interface org.youscope.plugin.continousimaging.ShortContinuousImagingJob
setImagingPeriod(int) - Method in class org.youscope.plugin.continousimaging.ShortContinuousImagingJobConfiguration
setImagingPeriod(int) - Method in class org.youscope.plugin.lifecelldetection.CellDetectionMeasurementConfiguration
setImagingPeriod(int) - Method in class org.youscope.plugin.livestream.ContinousMeasurementPanel: Sets the period length between two successive images.
setImagingPeriod(int) - Method in class org.youscope.plugin.multicameracontinuousimaging.MultiCameraContinousImagingConfiguration
setImagingPeriod(int) - Method in class org.youscope.plugin.multicolorstream.MultiStreamPanel: Sets the period length between two successive images.
setIncreaseContrast(boolean) - Method in class org.youscope.plugin.livestream.ContinousMeasurementPanel: Sets if the contrast should be automatically increased.
setIncreaseContrast(int, boolean) - Method in class org.youscope.plugin.multicolorstream.MultiStreamPanel: Sets if the contrast should be automatically increased.
setInitialMeasurementContextProperty(String, Serializable) - Method in interface org.youscope.common.measurement.Measurement: Sets a measurement context property.
setInitialPhase(double) - Method in class org.youscope.plugin.oscillatinginput.OscillatingDeviceJobConfiguration: Sets the initial phase of the oscillations in rad.
setInnerRadius(int) - Method in interface org.youscope.plugin.slimjob.SlimJob: Sets the radius of the inner circle (the hole in the "donut").
setInnerRadius(int) - Method in class org.youscope.plugin.slimjob.SlimJobConfiguration: Sets the radius of the inner circle (the hole in the "donut").
setInputJob(Job) - Method in interface org.youscope.plugin.controller.ControllerJob: Sets the job which should be used to create the table data used as input for the controller.
setInputJob(JobConfiguration) - Method in class org.youscope.plugin.controller.ControllerJobConfiguration: Sets the job which should be used to create the table data used as input for the controller.
setInputJob(AutoFocusJob) - Method in interface org.youscope.plugin.dropletmicrofluidics.DropletMicrofluidicJob: Sets the input job.
setInternalBinning(int) - Method in class org.youscope.plugin.quickdetect.QuickDetectConfiguration: Sets the binning internally used by the algorithm.
setJobs(JobConfiguration[]) - Method in interface org.youscope.common.job.JobContainerConfiguration: Sets the job list to the given list.
setJobs(JobConfiguration[]) - Method in class org.youscope.common.task.TaskConfiguration
setJobs(JobConfiguration[]) - Method in class org.youscope.plugin.autofocus.AutoFocusJobConfiguration
setJobs(JobConfiguration[]) - Method in class org.youscope.plugin.composedimaging.PlateScanningJobConfiguration
setJobs(JobConfiguration[]) - Method in class org.youscope.plugin.composedimaging.StaggeringJobConfiguration
setJobs(JobConfiguration[]) - Method in class org.youscope.plugin.compositejob.CompositeJobConfiguration
setJobs(JobConfiguration[]) - Method in class org.youscope.plugin.customjob.CustomJobConfiguration
setJobs(JobConfiguration[]) - Method in class org.youscope.plugin.deviceslides.DeviceSlidesJobConfiguration
setJobs(JobConfiguration[]) - Method in class org.youscope.plugin.lifecelldetection.CellDetectionJobConfiguration
setJobs(JobConfiguration[]) - Method in class org.youscope.plugin.livemodifiablejob.LiveModifiableJobConfiguration
setJobs(JobConfiguration[]) - Method in class org.youscope.plugin.microplatejob.MicroplateJobConfiguration
setJobs(JobConfiguration[]) - Method in class org.youscope.plugin.microplatemeasurement.MicroplateMeasurementConfiguration
setJobs(JobConfiguration[]) - Method in class org.youscope.plugin.repeatjob.RepeatJobConfiguration
setJobs(JobConfiguration[]) - Method in class org.youscope.plugin.scriptingjob.ScriptingJobConfiguration
setJobs(JobConfiguration[]) - Method in class org.youscope.plugin.simplemeasurement.SimpleMeasurementConfiguration
setJobs(JobConfiguration[]) - Method in class org.youscope.plugin.statistics.StatisticsJobConfiguration
setJobs(JobConfiguration[]) - Method in class org.youscope.plugin.waitjob.ExecuteAndWaitJobConfiguration
setJobs(JobConfiguration[]) - Method in class org.youscope.plugin.zslides.ZSlidesJobConfiguration
setJobs(JobConfiguration[]) - Method in class org.youscope.uielements.JobsDefinitionPanel: Sets the jobs this panel displays.
setLabel(String) - Method in class org.youscope.uielements.SingleComponentDefinitionPanel: Sets the label which is displayed to indicate the type choice.
setLag(int) - Method in class org.youscope.plugin.simplefocusscores.AutocorrelationFocusScoreConfiguration: Sets the lag between the two autocorrelations (in pixels).
setLockMicroscopeWhileRunning(boolean) - Method in interface org.youscope.common.measurement.Measurement: Sets if write access to the microscope is locked during the measurement.
setMargins(int, int, int, int) - Method in interface org.youscope.clientinterfaces.YouScopeFrame: Sets the margins between the frame borders and the frame content (i.e.
setMaskFileName(String) - Method in interface org.youscope.plugin.slimjob.SlimJob: Sets the file name of the mask which should be used to define foreground and background.
setMaskFileName(String) - Method in class org.youscope.plugin.slimjob.SlimJobConfiguration: Sets the file name of the mask which should be used to define foreground and background.
setMaskX(int) - Method in interface org.youscope.plugin.slimjob.SlimJob: Sets the X position of the center of the inner and outer circle (the "donut").
setMaskX(int) - Method in class org.youscope.plugin.slimjob.SlimJobConfiguration: Sets the X position of the center of the inner and outer circle (the "donut").
setMaskY(int) - Method in interface org.youscope.plugin.slimjob.SlimJob: Sets the Y position of the center of the inner and outer circle (the "donut").
setMaskY(int) - Method in class org.youscope.plugin.slimjob.SlimJobConfiguration: Sets the Y position of the center of the inner and outer circle (the "donut").
setMatlabLocation(String) - Static method in class org.youscope.plugin.matlabscripting.RemoteMatlabProxyController: Set the location of the MATLAB program.
setMatlabLocation(String) - Method in class org.youscope.plugin.matlabscripting.RemoteMatlabProxyFactory: Set the location of the MATLAB program.
setMaxCellDiameter(int) - Method in class org.youscope.plugin.quickdetect.QuickDetectConfiguration: Sets the maximal diameter in pixels a cell must have.
setMaxDeltaFlowRate(double) - Method in class org.youscope.plugin.dropletmicrofluidics.evaporationController.EvaporationControllerConfiguration: Maximal flow rate in ul/min for the correction of drolet height.
setMaxDeltaFlowRate(double) - Method in class org.youscope.plugin.dropletmicrofluidics.tablecontroller.TableControllerConfiguration: Maximal flow rate in ul/min for the correction of drolet height.
setMaximalValue(double) - Method in class org.youscope.uielements.DoubleTextField: Sets the maximal allowed value.
setMaximalValue(int) - Method in class org.youscope.uielements.IntegerTextField: Sets the maximal allowed value.
setMaximizable(boolean) - Method in class org.youscope.addon.AddonUIAdapter: Sets if this UI element will be maximizable if initialized as a frame.
setMaximizable(boolean) - Method in interface org.youscope.clientinterfaces.YouScopeFrame: Sets if the user should be able to maximize the frame.
setMaximize(boolean) - Method in class org.youscope.addon.AddonUIAdapter: Sets if this UI element should be maximized if it is a frame.
setMaximum(boolean) - Method in interface org.youscope.clientinterfaces.YouScopeFrame: Maximizes the frame (if maximum == true) or restores the actual frame's size (if maximum == false).
setMaxSearchSteps(int) - Method in class org.youscope.plugin.brentfocussearch.BrentFocusSearchConfiguration: Sets the maximal number of images which should be taken and analyzed to find the optional focal plane
setMaxValue(double) - Method in class org.youscope.plugin.oscillatinginput.OscillatingDeviceJobConfiguration
setMeasurementCallback(WaitForUserCallback) - Method in interface org.youscope.plugin.waitforuser.WaitForUserJob: Sets the callback to the client used by this job.
setMeasurementRuntime(int) - Method in class org.youscope.common.measurement.MeasurementConfiguration
setMeasurePosition(boolean, int, int) - Method in class org.youscope.plugin.microplatemeasurement.MicroplatePositionConfiguration: Sets if a given position in a well should be measured.
setMeasureWell(boolean, Well) - Method in class org.youscope.plugin.microplatemeasurement.MicroplatePositionConfiguration: Sets if the given well should be measured or not.
setMessage(String) - Method in interface org.youscope.plugin.waitforuser.WaitForUserJob: Sets the message to be displayed to the user.
setMessage(String) - Method in class org.youscope.plugin.waitforuser.WaitForUserJobConfiguration: Sets the message which is displayed to the user.
setMicrofluidicChipID(int) - Method in class org.youscope.plugin.dropletmicrofluidics.defaultobserver.DefaultObserverConfiguration: Sets the ID of the chip for which this observer observes the droplet height.
setMicroplateDimensions(int, int, double, double, int, int, double, double) - Method in class org.youscope.common.measurement.microplate.MicroplateConfiguration: Sets the dimensions of the microplate and the measured positions.
setMicroplateDimensions(int, int, double, double, int, int, double, double) - Method in class org.youscope.plugin.microplatemeasurement.MicroplatePositionConfiguration
setMicroplatePositions(MicroplatePositionConfiguration) - Method in class org.youscope.plugin.microplatejob.MicroplateJobConfiguration: Sets the used microplate and the measured positions therein.
setMicroplatePositions(MicroplatePositionConfiguration) - Method in class org.youscope.plugin.microplatemeasurement.MicroplateMeasurementConfiguration: Sets the used microplate and the measured positions therein.
setMicroplateType(Microplate) - Method in class org.youscope.common.measurement.microplate.MicroplateConfiguration: Sets the type of the microplate.
setMinCellDiameter(int) - Method in class org.youscope.plugin.quickdetect.QuickDetectConfiguration: Sets the minimal diameter in pixels a cell must have.
setMinimalTimeMS(long) - Method in interface org.youscope.plugin.lifecelldetection.CellDetectionJob: Sets the minimal time (in ms) the execution of the job should take.
setMinimalTimeMS(long) - Method in class org.youscope.plugin.lifecelldetection.CellDetectionJobConfiguration: Sets the minimal time (in ms) the execution of the job should take.
setMinimalValue(double) - Method in class org.youscope.uielements.DoubleTextField: Sets the minimal allowed value.
setMinimalValue(int) - Method in class org.youscope.uielements.IntegerTextField: Sets the minimal allowed value.
setMinMax(double, double) - Method in class org.youscope.uielements.HistogramPlot: Sets the minimum and the maximum of the histogram (in percentage of the total length).
setMinValue(double) - Method in class org.youscope.plugin.oscillatinginput.OscillatingDeviceJobConfiguration
setMultiPosDeviceSettings(DeviceSetting[][]) - Method in class org.youscope.plugin.deviceslides.DeviceSlidesJobConfiguration: Sets the list of device settings which should be applied to the positions.
setName(String) - Method in interface org.youscope.common.Component: Sets the name of the component meant for human interpretation.
setName(String) - Method in class org.youscope.common.job.JobAdapter
setName(String) - Method in class org.youscope.common.measurement.MeasurementConfiguration
setName(String) - Method in class org.youscope.common.resource.ResourceAdapter
setNemesysDevice(String) - Method in class org.youscope.plugin.dropletmicrofluidics.DropletMicrofluidicJobConfiguration: Sets the name of the Nemesys device.
setNemesysDevice(String) - Method in class org.youscope.plugin.nemesys.NemesysJobConfiguration: Sets the ID of the Nemesys device which should be controlled.
setNemesysDeviceName(String) - Method in interface org.youscope.plugin.nemesys.NemesysJob: Sets the name of the Nemesys device.
setNoImageText(String) - Method in class org.youscope.uielements.ImagePanel: Sets the text which should be displayed if no image is available, yet.
setNumExecutions(int) - Method in class org.youscope.common.task.PeriodConfiguration
setNumFlowUnits(int) - Method in interface org.youscope.addon.dropletmicrofluidics.DropletControllerConfigurationAddon: Sets the number of flow units available.
setNumImages(int) - Method in interface org.youscope.plugin.continousimaging.ShortContinuousImagingJob: Sets the number of images which should be taken.
setNumImages(int) - Method in class org.youscope.plugin.continousimaging.ShortContinuousImagingJobConfiguration: Sets the number of images which should be taken.
setNumIterationsBreak(int) - Method in interface org.youscope.plugin.composedimaging.StaggeringJob: Set the number of iterations for which nothing should be done before imaging in the next iteration the defined number of tiles.
setNumIterationsBreak(int) - Method in class org.youscope.plugin.composedimaging.StaggeringJobConfiguration: Set the number of iterations for which nothing should be done before imaging in the next iteration the defined number of tiles.
setNumPixels(Dimension) - Method in class org.youscope.plugin.composedimaging.ComposedImagingJobConfiguration
setNumPixels(Dimension) - Method in class org.youscope.plugin.composedimaging.ComposedImagingMeasurementConfiguration: Sets the number of pixels in one image.
setNumPositions(int) - Method in class org.youscope.common.measurement.microplate.MicroplateConfiguration: Microplate measurements can be "misused" to measure just some arbitrary positions.
setNumPositions(int) - Method in class org.youscope.plugin.microplatemeasurement.MicroplatePositionConfiguration
setNumRepeats(int) - Method in interface org.youscope.plugin.repeatjob.RepeatJob: Sets the number of times the sub-jobs should be repeated each time the repeat-job is executed.
setNumRepeats(int) - Method in class org.youscope.plugin.repeatjob.RepeatJobConfiguration: Sets the number of times the sub-jobs should be repeated each time the repeat-job is executed.
setNumSearchSteps(int) - Method in class org.youscope.plugin.exhaustivefocussearch.ExhaustiveFocusSearchConfiguration: Sets the number of images which should be taken and analyzed to find the optional focal plane
setNumTiles(Dimension) - Method in interface org.youscope.plugin.composedimaging.PlateScanningJob: Sets the number of tiles/sub-images
setNumTiles(Dimension) - Method in interface org.youscope.plugin.composedimaging.StaggeringJob: Sets the number of tiles/sub-images
setNumTilesPerIteration(int) - Method in interface org.youscope.plugin.composedimaging.StaggeringJob: Set the number of tiles which should be imaged per iteration.
setNumTilesPerIteration(int) - Method in class org.youscope.plugin.composedimaging.StaggeringJobConfiguration: Set the number of tiles which should be imaged per iteration.
setNumTilesX(int) - Method in class org.youscope.plugin.composedimaging.PlateScanningJobConfiguration
setNumTilesX(int) - Method in class org.youscope.plugin.composedimaging.StaggeringJobConfiguration
setNumTilesY(int) - Method in class org.youscope.plugin.composedimaging.PlateScanningJobConfiguration
setNumTilesY(int) - Method in class org.youscope.plugin.composedimaging.StaggeringJobConfiguration
setNumWellsX(int) - Method in class org.youscope.common.measurement.microplate.MicroplateConfiguration: Sets the number of wells in the x-direction.
setNumWellsY(int) - Method in class org.youscope.common.measurement.microplate.MicroplateConfiguration: Sets the number of wells in the y-direction.
setNx(int) - Method in class org.youscope.plugin.composedimaging.ComposedImagingJobConfiguration
setNx(int) - Method in class org.youscope.plugin.composedimaging.ComposedImagingMeasurementConfiguration: Sets the number of images which should be made in the x-direction.
setNy(int) - Method in class org.youscope.plugin.composedimaging.ComposedImagingJobConfiguration
setNy(int) - Method in class org.youscope.plugin.composedimaging.ComposedImagingMeasurementConfiguration: Sets the number of images which should be made in the y-direction.
setObserver(DropletObserverResource) - Method in interface org.youscope.plugin.dropletmicrofluidics.DropletMicrofluidicJob: Sets the observer algorithm used to estimate the droplet heights from periodical autofocus measurements.
setObserverConfiguration(DropletObserverConfiguration) - Method in class org.youscope.plugin.dropletmicrofluidics.DropletMicrofluidicJobConfiguration: Sets the configuration of the observer of the droplet heights.
setObserverIndividual(double) - Method in class org.youscope.plugin.dropletmicrofluidics.defaultobserver.DefaultObserverConfiguration: Sets the learn rate constant of individual droplet heights.
setObserverMean(double) - Method in class org.youscope.plugin.dropletmicrofluidics.defaultobserver.DefaultObserverConfiguration: Sets the learn rate constant of mean droplet heights.
setOffset(double, int) - Method in interface org.youscope.addon.microscopeaccess.AutoFocusDeviceInternal: Sets the current offset.
setOffset(double) - Method in interface org.youscope.common.microscope.AutoFocusDevice: Sets the current offset.
setOffset(double) - Method in interface org.youscope.plugin.outoffocus.OutOfFocusJob: Sets the focus offset in which the image should be taken.
setOnixProtocol(String) - Method in interface org.youscope.plugin.onix.OnixJob: Sets the protocol which gets evaluated on the onix device every time the job gets evaluated.
setOnixProtocol(String) - Method in class org.youscope.plugin.onix.OnixJobConfiguration: Sets the protocol which gets evaluated on the onix device every time the job gets evaluated.
setOpen(boolean, int) - Method in interface org.youscope.addon.microscopeaccess.ShutterDeviceInternal: Opens (open == true) or closes (open == false) the shutter.
setOpen(boolean) - Method in interface org.youscope.common.microscope.ShutterDevice: Opens (open == true) or closes (open == false) the shutter.
setOuterRadius(int) - Method in interface org.youscope.plugin.slimjob.SlimJob: Sets the radius of the outer circle (the "donut").
setOuterRadius(int) - Method in class org.youscope.plugin.slimjob.SlimJobConfiguration: Sets the radius of the outer circle (the "donut").
setOutput(int, String, String) - Method in interface org.youscope.plugin.controller.ControllerCallback: Sets the output in the given row of the output data table with the given column header to the given value.
setOutput(int, String, int) - Method in interface org.youscope.plugin.controller.ControllerCallback: Sets the output in the given row of the output data table with the given column header to the given value.
setOutput(int, String, float) - Method in interface org.youscope.plugin.controller.ControllerCallback: Sets the output in the given row of the output data table with the given column header to the given value.
setOutput(int, String, boolean) - Method in interface org.youscope.plugin.controller.ControllerCallback: Sets the output in the given row of the output data table with the given column header to the given value.
setOutput(int, String, long) - Method in interface org.youscope.plugin.controller.ControllerCallback: Sets the output in the given row of the output data table with the given column header to the given value.
setOutput(int, String, double) - Method in interface org.youscope.plugin.controller.ControllerCallback: Sets the output in the given row of the output data table with the given column header to the given value.
setOutput(int, String, Serializable) - Method in interface org.youscope.plugin.controller.ControllerCallback: Sets the output in the given row of the output data table with the given column header to the given value.
setOutput(int, int, String) - Method in interface org.youscope.plugin.controller.ControllerCallback: Sets the output in the given row of the output data table with the given column number to the given value.
setOutput(int, int, Serializable) - Method in interface org.youscope.plugin.controller.ControllerCallback: Sets the output in the given row of the output data table with the given column number to the given value.
setOutput(int, int, float) - Method in interface org.youscope.plugin.controller.ControllerCallback: Sets the output in the given row of the output data table with the given column number to the given value.
setOutput(int, int, boolean) - Method in interface org.youscope.plugin.controller.ControllerCallback: Sets the output in the given row of the output data table with the given column number to the given value.
setOutput(int, int, long) - Method in interface org.youscope.plugin.controller.ControllerCallback: Sets the output in the given row of the output data table with the given column number to the given value.
setOutput(int, int, int) - Method in interface org.youscope.plugin.controller.ControllerCallback: Sets the output in the given row of the output data table with the given column number to the given value.
setOutput(int, int, double) - Method in interface org.youscope.plugin.controller.ControllerCallback: Sets the output in the given row of the output data table with the given column number to the given value.
setOutput(String, String) - Method in interface org.youscope.plugin.controller.ControllerCallback: Sets the output in the first row of the output data table with the given column header to the given value.
setOutput(String, int) - Method in interface org.youscope.plugin.controller.ControllerCallback: Sets the output in the first row of the output data table with the given column header to the given value.
setOutput(String, double) - Method in interface org.youscope.plugin.controller.ControllerCallback: Sets the output in the first row of the output data table with the given column header to the given value.
setOutput(int, String) - Method in interface org.youscope.plugin.controller.ControllerCallback: Sets the output in the first row of the output data table with the given column number to the given value.
setOutput(int, int) - Method in interface org.youscope.plugin.controller.ControllerCallback: Sets the output in the first row of the output data table with the given column number to the given value.
setOutput(int, double) - Method in interface org.youscope.plugin.controller.ControllerCallback: Sets the output in the first row of the output data table with the given column number to the given value.
setOutputJob(Job) - Method in interface org.youscope.plugin.controller.ControllerJob: Sets the job which should be used to consume the output from the controller.
setOutputJob(JobConfiguration) - Method in class org.youscope.plugin.controller.ControllerJobConfiguration: Sets the job which should be used to consume the output from the controller.
setOutputJob(NemesysJob) - Method in interface org.youscope.plugin.dropletmicrofluidics.DropletMicrofluidicJob: Sets the nemesys job which is used as the output
setOverlap(double) - Method in class org.youscope.plugin.composedimaging.ComposedImagingJobConfiguration
setOverlap(double) - Method in class org.youscope.plugin.composedimaging.ComposedImagingMeasurementConfiguration: Sets the overlap (0.0-1.0) between neighboring images.
setPathOptimizerID(String) - Method in class org.youscope.plugin.microplatejob.MicroplateJobConfiguration: Sets the ID of the optimizer which should be used to minimize the distances between two wells/positions measured.
setPathOptimizerID(String) - Method in class org.youscope.plugin.microplatemeasurement.MicroplateMeasurementConfiguration: Sets the ID of the optimizer which should be used to minimize the distances between two wells/positions measured.
setPeriod(int) - Method in class org.youscope.common.task.RegularPeriodConfiguration
setPeriod(PeriodConfiguration) - Method in class org.youscope.common.task.TaskConfiguration
setPeriod(PeriodConfiguration) - Method in class org.youscope.plugin.composedimaging.ComposedImagingMeasurementConfiguration: Sets the period length between single repetitions of the imaging process.
setPeriod(PeriodConfiguration) - Method in class org.youscope.plugin.microplatemeasurement.MicroplateMeasurementConfiguration
setPeriod(PeriodConfiguration) - Method in class org.youscope.plugin.simplemeasurement.SimpleMeasurementConfiguration
setPeriod(VaryingPeriodConfiguration) - Method in class org.youscope.uielements.PeriodVaryingPanel: Sets the period configuration.
setPeriodLength(int) - Method in class org.youscope.plugin.oscillatinginput.OscillatingDeviceJobConfiguration: Sets the period length in seconds.
setPeriods(int[]) - Method in class org.youscope.common.task.VaryingPeriodConfiguration: Sets the periods.
setPhaseShiftMask(int, int) - Method in interface org.youscope.plugin.slimjob.SlimJob: Sets the phase shift of the mask (the donut) for the maskID mask.
setPhaseShiftMask(int, int) - Method in class org.youscope.plugin.slimjob.SlimJobConfiguration: Sets the phase shift of the mask (the donut) for the maskID mask.
setPhaseShiftOutside(int) - Method in interface org.youscope.plugin.slimjob.SlimJob: Sets the phase shift outside of the mask (background of donut).
setPhaseShiftOutside(int) - Method in class org.youscope.plugin.slimjob.SlimJobConfiguration: Sets the phase shift outside of the mask (background of donut).
setPixelSize(double) - Method in interface org.youscope.common.microscope.PixelSize: Sets the pixel size in micro meters.
setPixelSize(double) - Method in class org.youscope.plugin.composedimaging.ComposedImagingJobConfiguration
setPixelSize(double) - Method in class org.youscope.plugin.composedimaging.ComposedImagingMeasurementConfiguration: Sets the size of one pixel in micro meters.
setPixelSizeID(String) - Method in class org.youscope.plugin.composedimaging.ComposedImagingJobConfiguration: Sets the ID of the pixel size setting, or null if the pixel size does not correspond to a predefined pixel size setting.
setPixelSizeID(String) - Method in class org.youscope.plugin.composedimaging.ComposedImagingMeasurementConfiguration: Sets the ID of the pixel size setting, or null if the pixel size does not correspond to a predefined pixel size setting.
setPixelSizeSettings(DeviceSetting[]) - Method in interface org.youscope.common.microscope.PixelSize: Sets all device settings corresponding to this pixel size.
setPopupLocation(int) - Method in class org.youscope.uielements.ComponentComboBox: Sets the location of the popup menu relative to the button.
setPosition(double, double, int) - Method in interface org.youscope.addon.microscopeaccess.StageDeviceInternal: Sets the absolute position of the stage.
setPosition(double, double) - Method in interface org.youscope.common.job.basicjobs.ChangePositionJob: Sets the position where the microscope should move to.
setPosition(double, boolean) - Method in interface org.youscope.common.job.basicjobs.FocusingJob: Sets the position the focus/autofocus should go to.
setPosition(double, double) - Method in interface org.youscope.common.microscope.StageDevice: Sets the absolute position of the stage.
setPosition(double) - Method in class org.youscope.plugin.focusingjob.FocusingJobConfiguration
setPosition(XYAndFocusPosition, Well, int, int) - Method in class org.youscope.plugin.microplatemeasurement.MicroplatePositionConfiguration: Sets the x, y, and focus value for the given position in the given well.
setPosition(double) - Method in class org.youscope.plugin.outoffocus.OutOfFocusJobConfiguration
setPositionInformation(PositionInformation) - Method in class org.youscope.common.image.ImageEvent: Sets the information about the logical position this image was made in.
setPositionInformation(PositionInformation) - Method in class org.youscope.common.table.Table: Sets the logical position information in the measurement where this table was created.
setPreferredSize(Dimension) - Method in class org.youscope.addon.AddonUIAdapter: Set the preferred size of this UI element.
setProperty(StandardProperty, Object) - Method in interface org.youscope.clientinterfaces.YouScopeProperties: Sets the standard property to the given value.
setProperty(String, String) - Method in interface org.youscope.clientinterfaces.YouScopeProperties: Sets the property with the given name to the given value.
setProperty(String, int) - Method in interface org.youscope.clientinterfaces.YouScopeProperties: Sets the property with the given name to the given value.
setProperty(String, double) - Method in interface org.youscope.clientinterfaces.YouScopeProperties: Sets the property with the given name to the given value.
setProperty(String, boolean) - Method in interface org.youscope.clientinterfaces.YouScopeProperties: Sets the property with the given name to the given value.
setProperty(String, Serializable) - Method in class org.youscope.common.measurement.SimpleMeasurementContext
setProperty(String, Serializable) - Method in interface org.youscope.common.MeasurementContext: Sets a property, such that it can be loaded by any other job in the measurement.
setProperty(String) - Method in class org.youscope.plugin.oscillatinginput.OscillatingDeviceJobConfiguration
setRatioHeightToVolume(double) - Method in class org.youscope.plugin.dropletmicrofluidics.evaporationController.EvaporationControllerConfiguration: Sets the (estimated) ratio between droplet height in um and the droplet volume in ul.
setRatioHeightToVolume(double) - Method in class org.youscope.plugin.dropletmicrofluidics.flexiblecontroller.FlexibleControllerConfiguration: Sets the (estimated) ratio between droplet height in um and the droplet volume in ul.
setRatioHeightToVolume(double) - Method in class org.youscope.plugin.dropletmicrofluidics.tablecontroller.TableControllerConfiguration: Sets the (estimated) ratio between droplet height in um and the droplet volume in ul.
setReflectorDevice(String) - Method in interface org.youscope.plugin.slimjob.SlimJob: Returns the name of the reflector device which should be used to generate the pattern.
setReflectorDevice(String) - Method in class org.youscope.plugin.slimjob.SlimJobConfiguration: Returns the name of the reflector device which should be used to generate the pattern.
setRelative(boolean) - Method in class org.youscope.plugin.focusingjob.FocusingJobConfiguration: Set to true if the focus position is an offset to the current focus position.
setRelativeFocusPosition(double, int) - Method in interface org.youscope.addon.microscopeaccess.FocusDeviceInternal: Sets the position of the current focus device relative to the current focus.
setRelativeFocusPosition(double) - Method in interface org.youscope.common.microscope.FocusDevice: Sets the position of the current focus device relative to the current focus.
setRelativeFocusPosition(double, int) - Method in class org.youscope.plugin.microscopeaccess.FocusDeviceImpl
setRelativePosition(double, double, int) - Method in interface org.youscope.addon.microscopeaccess.StageDeviceInternal: Sets the position of the stage relative to the current position.
setRelativePosition(double, double) - Method in interface org.youscope.common.job.basicjobs.ChangePositionJob: Sets the relative distance for which the microscope should move, starting at the current position.
setRelativePosition(double, double) - Method in interface org.youscope.common.microscope.StageDevice: Sets the position of the stage relative to the current position.
setRelativeValue(float) - Method in class org.youscope.common.microscope.DeviceSetting: Sets the current value of the setting relative to its previous value.
setRelativeValue(int) - Method in class org.youscope.common.microscope.DeviceSetting: Sets the current value of the setting relative to its previous value.
setRememberFocus(boolean) - Method in interface org.youscope.plugin.autofocus.AutoFocusJob: Set to true if next focus search should be centered around the last iterations maximal focal plane.
setRememberFocus(boolean) - Method in class org.youscope.plugin.autofocus.AutoFocusJobConfiguration: Set to true if next focus search should be centered around the last iterations maximal focal plane.
setRemoteScriptEngine(RemoteScriptEngine) - Method in interface org.youscope.common.job.basicjobs.ScriptingJob: Sets the remote script engine which should be null.
setResetFocusAfterSearch(boolean) - Method in interface org.youscope.plugin.autofocus.AutoFocusJob: Defines if the focus should be reset to its original value after the job (and all sub-jobs) finished.
setResetFocusAfterSearch(boolean) - Method in class org.youscope.plugin.autofocus.AutoFocusJobConfiguration: Defines if the focus should be reset to its original value after the job (and all sub-jobs) finished.
setResizable(boolean) - Method in class org.youscope.addon.AddonUIAdapter: Sets if this element should be resizable.
setResizable(boolean) - Method in interface org.youscope.clientinterfaces.YouScopeFrame: Sets if the frame is resizable or not.This might only be interpreted as a hint by certain implementations.
setRuntime(int) - Method in interface org.youscope.common.measurement.Measurement: Sets the runtime of the measurement.
setSaveImages(boolean) - Method in class org.youscope.plugin.composedimaging.ComposedImagingJobConfiguration
setSaveImages(boolean) - Method in class org.youscope.plugin.composedimaging.ComposedImagingMeasurementConfiguration: Sets if taken images should be saved to disk
setSaveImages(boolean) - Method in class org.youscope.plugin.continousimaging.ContinousImagingMeasurementConfiguration
setSaveImages(boolean) - Method in class org.youscope.plugin.continousimaging.ContinuousImagingJobConfiguration
setSaveImages(boolean) - Method in class org.youscope.plugin.continousimaging.ShortContinuousImagingJobConfiguration
setSaveImages(boolean) - Method in class org.youscope.plugin.imagingjob.ImagingJobConfiguration
setSaveImages(boolean) - Method in class org.youscope.plugin.lifecelldetection.CellDetectionMeasurementConfiguration
setSaveImages(boolean) - Method in class org.youscope.plugin.multicameracontinuousimaging.MultiCameraContinousImagingConfiguration
setSaveImages(boolean) - Method in class org.youscope.plugin.multicamerajob.ParallelImagingJobConfiguration
setSaveImages(boolean) - Method in class org.youscope.plugin.outoffocus.OutOfFocusJobConfiguration
setSaveImages(boolean) - Method in class org.youscope.plugin.slimjob.SlimJobConfiguration
setSaveSettings(SaveSettingsConfiguration) - Method in class org.youscope.common.measurement.MeasurementConfiguration: Defines how the measurement should be saved.
setSaveSettings(SaveSettings) - Method in interface org.youscope.common.saving.MeasurementSaver: Sets the settings how the measurement should be saved to the disk (e.g.
setScore(double) - Method in interface org.youscope.plugin.matlabfocusscores.FocusSink: Sets the focus score.
setScoreAlgorithm(MatlabScoreType) - Method in class org.youscope.plugin.matlabfocusscores.MatlabScoresConfiguration: Sets the algorithm for the focus score calculation.
setScript(String) - Method in interface org.youscope.plugin.fluigent.FluigentJob: Sets the script which gets evaluated by the script engine every time the job runs.
setScript(String) - Method in class org.youscope.plugin.fluigent.FluigentJobConfiguration: Sets the script which controls the pumps, i.e.
setScript(String) - Method in interface org.youscope.plugin.nemesys.NemesysJob: Sets the script which gets evaluated by the script engine every time the job runs.
setScript(String) - Method in class org.youscope.plugin.nemesys.NemesysJobConfiguration: Sets the script which controls the syringes, i.e.
setScriptEngine(String) - Method in interface org.youscope.common.job.basicjobs.ScriptingJob: Sets the script engine with which the scripts should be evaluated.
setScriptEngine(String) - Method in interface org.youscope.plugin.fluigent.FluigentJob: Sets the script engine with which the scripts should be evaluated.
setScriptEngine(String) - Method in class org.youscope.plugin.fluigent.FluigentJobConfiguration: Sets the name of the script engine with which the script should be executed.
setScriptEngine(String) - Method in interface org.youscope.plugin.nemesys.NemesysJob: Sets the script engine with which the scripts should be evaluated.
setScriptEngine(String) - Method in class org.youscope.plugin.nemesys.NemesysJobConfiguration: Sets the name of the script engine with which the script should be executed.
setScriptEngine(String) - Method in class org.youscope.plugin.scriptingjob.ScriptingJobConfiguration
setScriptFile(URL) - Method in interface org.youscope.common.job.basicjobs.ScriptingJob: Sets the file of the script which should be evaluated by the corresponding script engine.
setScriptFile(URL) - Method in class org.youscope.plugin.scriptingjob.ScriptingJobConfiguration: Sets the file which should be executed by this script job (the file where the script is in).
setScriptStyleID(String) - Method in class org.youscope.uielements.scripteditor.ScriptEditor: Searches for a script style with the specific ID and sets the source code formatting of the editor to this style, if found.
setSegmentationImageSaveName(String) - Method in class org.youscope.plugin.lifecelldetection.CellDetectionJobConfiguration: Sets the name under which the segmentation image should be saved.
setSelectAllWellPositions(boolean) - Method in class org.youscope.plugin.microplatemeasurement.MicroplatePositionConfiguration: Select or unselects all positions in a well.
setSelectAllWells(boolean) - Method in class org.youscope.plugin.microplatemeasurement.MicroplatePositionConfiguration: Select or unselects all wells in a microplate.
setSelectedCells(boolean[][]) - Method in class org.youscope.uielements.CellSelectionTable: Sets the selected cells.
setSelectedCells(Point[]) - Method in class org.youscope.uielements.CellSelectionTable: Sets the selected cells.
setSelectedElement(ComponentMetadata<? extends C>) - Method in class org.youscope.uielements.ComponentComboBox: Sets the currently selected element.
setSelectedElement(String) - Method in class org.youscope.uielements.ComponentComboBox: Sets the currently selected element.
setSettings(DeviceSetting[]) - Method in class org.youscope.uielements.DeviceSettingsPanel: Sets the settings which are displayed.
setShowCloseButton(boolean) - Method in class org.youscope.addon.AddonUIAdapter: Set to true if a commit button should be automatically added when addon is initialized as a frame.
setShutter(String) - Method in interface org.youscope.common.microscope.Channel: Sets the shutter device of this channel.
setShutterDevice(String, int) - Method in interface org.youscope.addon.microscopeaccess.MicroscopeInternal: Sets the default shutter device.
setShutterDevice(String) - Method in interface org.youscope.common.microscope.Microscope: Sets the default shutter device.
setSize(Dimension) - Method in interface org.youscope.clientinterfaces.YouScopeFrame: Sets the size of the frame.
setSlideZPositions(double[]) - Method in class org.youscope.plugin.zslides.ZSlidesJobConfiguration: Sets the z positions where the jobs should be executed.
setSlimDelayMs(int) - Method in interface org.youscope.plugin.slimjob.SlimJob: Sets the time delay in ms between changing the SLIM reflector settings and taking an image.
setSlimDelayMS(int) - Method in class org.youscope.plugin.slimjob.SlimJobConfiguration: Sets the time delay in ms between changing the SLIM reflector settings and taking an image.
setStageDevice(String, int) - Method in interface org.youscope.addon.microscopeaccess.MicroscopeInternal: Sets the default stage device.
setStageDevice(String) - Method in interface org.youscope.common.job.basicjobs.ChangePositionJob: Sets the ID of the stage device whose position should be changed.
setStageDevice(String) - Method in interface org.youscope.common.microscope.Microscope: Sets the default stage device.
setStageDevice(String) - Method in class org.youscope.plugin.changepositionjob.ChangePositionJobConfiguration: Set to the stage device which should be moved, or to null for the default stage.
setStageDevice(String) - Method in class org.youscope.plugin.microplatejob.MicroplateJobConfiguration: Sets the ID of the stage device which should be used to change between wells and positions.
setStageDevice(String) - Method in class org.youscope.plugin.microplatemeasurement.MicroplateMeasurementConfiguration: Sets the ID of the stage device which should be used to change between wells and positions.
setStageDevice(String) - Method in class org.youscope.plugin.usercontrolmeasurement.UserControlMeasurementConfiguration: Sets the stage device which should be monitored.
setStageTolerance(double) - Method in class org.youscope.plugin.usercontrolmeasurement.UserControlMeasurementConfiguration: Sets the tolerance for the stage monitoring (in muM).
setStartTime(int) - Method in class org.youscope.common.task.PeriodConfiguration
setStartupDeviceSettings(DeviceSetting[]) - Method in interface org.youscope.common.measurement.Measurement: Sets the device settings which should be applied (once) the measurement starts.
setState(int, int) - Method in interface org.youscope.addon.microscopeaccess.StateDeviceInternal: Sets the current state.
setState(String, int) - Method in interface org.youscope.addon.microscopeaccess.StateDeviceInternal: Sets the current state.
setState(int) - Method in interface org.youscope.common.microscope.StateDevice: Sets the current state.
setState(String) - Method in interface org.youscope.common.microscope.StateDevice: Sets the current state.
setState(String, String) - Method in interface org.youscope.plugin.controller.ControllerCallback: Sets the state with the given name to the given value.
setState(String, int) - Method in interface org.youscope.plugin.controller.ControllerCallback: Sets the state with the given name to the given value.
setState(String, double) - Method in interface org.youscope.plugin.controller.ControllerCallback: Sets the state with the given name to the given value.
setState(String, String) - Method in interface org.youscope.plugin.fluigent.FluigentScriptCallback: Sets the state with the given name to the given value.
setState(String, int) - Method in interface org.youscope.plugin.fluigent.FluigentScriptCallback: Sets the state with the given name to the given value.
setState(String, double) - Method in interface org.youscope.plugin.fluigent.FluigentScriptCallback: Sets the state with the given name to the given value.
setState(String, String) - Method in interface org.youscope.plugin.nemesys.NemesysScriptCallback: Sets the state with the given name to the given value.
setState(String, int) - Method in interface org.youscope.plugin.nemesys.NemesysScriptCallback: Sets the state with the given name to the given value.
setState(String, double) - Method in interface org.youscope.plugin.nemesys.NemesysScriptCallback: Sets the state with the given name to the given value.
setStateLabel(int, String, int) - Method in interface org.youscope.addon.microscopeaccess.StateDeviceInternal: Sets the label for the given state.
setStateLabel(int, String) - Method in interface org.youscope.common.microscope.StateDevice: Sets the label for the given state.
setStateLabels(String[], int) - Method in interface org.youscope.addon.microscopeaccess.StateDeviceInternal: Sets all state labels.
setStateLabels(String[]) - Method in interface org.youscope.common.microscope.StateDevice: Sets all state labels.
setStatisticsFileName(String) - Method in class org.youscope.plugin.microplatemeasurement.MicroplateMeasurementConfiguration: Sets the name (without extension) of the file in which statistics of the measurement should be saved to.
setStatisticsFileName(String) - Method in class org.youscope.plugin.simplemeasurement.SimpleMeasurementConfiguration: Sets the name (without extension) of the file in which statistics of the measurement should be saved to.
setStringValue(String, int) - Method in class org.youscope.plugin.microscopeaccess.PropertyImpl
setSubImageNumber(Dimension) - Method in interface org.youscope.plugin.composedimaging.ComposedImagingJob: Sets the number of sub-images
setSwitch() - Method in interface org.youscope.plugin.onix.OnixAddon: No idea about the functionality behind this function.
setSwitchXY(boolean, int) - Method in interface org.youscope.addon.microscopeaccess.CameraDeviceInternal: Sets if the x and the y direction should be switched for images made by this camera.
setSwitchXY(boolean) - Method in class org.youscope.common.image.ImageEvent: Sets if the x and the y direction should be switched for images made by this camera.
setSwitchXY(boolean) - Method in interface org.youscope.common.microscope.CameraDevice: Sets if the x and the y direction should be switched for images made by this camera.
setSyringeTableRows(FlexibleSyringeTableRow[]) - Method in class org.youscope.plugin.dropletmicrofluidics.flexiblecontroller.FlexibleControllerConfiguration: Sets a table defining when which syringe should act as an outflow or inflow syringe.
setSyringeTableRows(SyringeTableRow[]) - Method in class org.youscope.plugin.dropletmicrofluidics.tablecontroller.TableControllerConfiguration: Sets a table defining when which syringe should act as an outflow or inflow syringe.
setSystemShutdownSettings(DeviceSetting[], int) - Method in interface org.youscope.addon.microscopeaccess.MicroscopeConfigurationInternal: Set the setting which will be applied at shutdown.
setSystemShutdownSettings(DeviceSetting[]) - Method in interface org.youscope.common.microscope.MicroscopeConfiguration: Set the setting which will be applied at shutdown.
setSystemStartupSettings(DeviceSetting[], int) - Method in interface org.youscope.addon.microscopeaccess.MicroscopeConfigurationInternal: Set the setting which will be applied at startup.
setSystemStartupSettings(DeviceSetting[]) - Method in interface org.youscope.common.microscope.MicroscopeConfiguration: Set the setting which will be applied at startup.
setTableSaveName(String) - Method in class org.youscope.plugin.fluigent.FluigentJobConfiguration: Sets the name (without extension) of the file to which the flow rate and volume information of the syringe pumps should be stored during evaluation.
setTableSaveName(String) - Method in class org.youscope.plugin.nemesys.NemesysJobConfiguration: Sets the name (without extension) of the file to which the flow rate and volume information of the syringe pumps should be stored during evaluation.
setTargetFlowRate(double) - Method in class org.youscope.plugin.dropletmicrofluidics.tablecontroller.TableControllerConfiguration: Sets the target flow rate in ul/min
setTasks(TaskConfiguration[]) - Method in class org.youscope.plugin.taskmeasurement.TaskMeasurementConfiguration
setTasks(TaskConfiguration[]) - Method in class org.youscope.uielements.TasksDefinitionPanel: Sets the tasks this panel displays.
setText(String) - Method in class org.youscope.uielements.ComponentComboBox
setText(String) - Method in class org.youscope.uielements.DescriptionPanel: Sets the text which should be displayed in the description pane.
setText(String) - Method in class org.youscope.uielements.LinkLabel
setText(String) - Method in class org.youscope.uielements.scripteditor.ScriptEditor: Sets the text which is displayed (without formatting).
setText(String) - Method in class org.youscope.uielements.StateButton: Changes the text of the state button.
setTimeConstantIntegral(long) - Method in class org.youscope.plugin.dropletmicrofluidics.evaporationController.EvaporationControllerConfiguration: Sets the time constant (in ms) of the integral part of the controller.
setTimeConstantIntegral(long) - Method in class org.youscope.plugin.dropletmicrofluidics.flexiblecontroller.FlexibleControllerConfiguration: Sets the time constant (in ms) of the integral part of the controller.
setTimeConstantIntegral(long) - Method in class org.youscope.plugin.dropletmicrofluidics.tablecontroller.TableControllerConfiguration: Sets the time constant (in ms) of the integral part of the controller.
setTimeConstantProportional(long) - Method in class org.youscope.plugin.dropletmicrofluidics.evaporationController.EvaporationControllerConfiguration: Sets the time constant (in ms) of the proportional part of the controller.
setTimeConstantProportional(long) - Method in class org.youscope.plugin.dropletmicrofluidics.flexiblecontroller.FlexibleControllerConfiguration: Sets the time constant (in ms) of the proportional part of the controller.
setTimeConstantProportional(long) - Method in class org.youscope.plugin.dropletmicrofluidics.tablecontroller.TableControllerConfiguration: Sets the time constant (in ms) of the proportional part of the controller.
setTimeout(int) - Static method in class org.youscope.plugin.matlabscripting.RemoteMatlabProxyController: Sets the maximum amount of time to wait in attempting to setup a connection to MATLAB in milliseconds.
setTimeout(int) - Method in class org.youscope.plugin.matlabscripting.RemoteMatlabProxyFactory: Sets the maximum amount of time to wait in attempting to setup a connection to MATLAB in milliseconds.
setTimePerWell(int) - Method in class org.youscope.plugin.microplatemeasurement.MicroplateMeasurementConfiguration
SettingException - Exception in org.youscope.common.microscope: An exception thrown if a requested setting is undefined or a provided setting is invalid.
SettingException(String) - Constructor for exception org.youscope.common.microscope.SettingException: Constructor.
SettingException(String, Exception) - Constructor for exception org.youscope.common.microscope.SettingException: Constructor.
setTitle(String) - Method in class org.youscope.addon.AddonUIAdapter: Sets the title of this UI element.
setTitle(String) - Method in interface org.youscope.clientinterfaces.YouScopeFrame: Sets the title of the frame.
setTitle(String) - Method in class org.youscope.uielements.ImagePanel: Sets the title of the frame, which is opened by ImagePanel.toFrame().
setToDefault(T) - Method in class org.youscope.addon.measurement.MeasurementAddonUIPage: Sets the values corresponding to this page to their default values.
setToDefault(MeasurementConfiguration) - Method in class org.youscope.addon.measurement.pages.DescriptionPage
setToDefault(MeasurementConfiguration) - Method in class org.youscope.addon.measurement.pages.GeneralSettingsPage
setToDefault(MeasurementConfiguration) - Method in class org.youscope.addon.measurement.pages.StartAndEndSettingsPage
setToDefault(T) - Method in class org.youscope.plugin.microplatejob.JobConfigurationPage: Sets the values corresponding to this page to their default values.
setToDefault(T) - Method in class org.youscope.plugin.microplatejob.JobConfigurationPanel: Sets all values of the measurement configuration to their default value.
setToErrorState(String, Exception) - Method in interface org.youscope.clientinterfaces.YouScopeFrame: Removes all previously added UI elements from the frame and displays instead the given error.
setTolerance(double) - Method in class org.youscope.plugin.brentfocussearch.BrentFocusSearchConfiguration: Sets the tolerance, in um, for the focal plane position.
setTrackCells(boolean) - Method in class org.youscope.plugin.cellx.CellXConfiguration: Set to true if cells should not only be segmented, but also be tracked between adjacent frames.
setTransposeX(boolean, int) - Method in interface org.youscope.addon.microscopeaccess.CameraDeviceInternal: Sets if the x-direction of images made by this camera should be transposed.
setTransposeX(boolean, int) - Method in interface org.youscope.addon.microscopeaccess.StageDeviceInternal: Sets if the x-direction should be transposed.
setTransposeX(boolean) - Method in class org.youscope.common.image.ImageEvent: Sets if the x-direction of images made by this camera should be transposed.
setTransposeX(boolean) - Method in interface org.youscope.common.microscope.CameraDevice: Sets if the x-direction of images made by this camera should be transposed.
setTransposeX(boolean) - Method in interface org.youscope.common.microscope.StageDevice: Sets if the x-direction should be transposed.
setTransposeY(boolean, int) - Method in interface org.youscope.addon.microscopeaccess.CameraDeviceInternal: Sets if the y-direction of images made by this camera should be transposed.
setTransposeY(boolean, int) - Method in interface org.youscope.addon.microscopeaccess.StageDeviceInternal: Sets if the y-direction should be transposed.
setTransposeY(boolean) - Method in class org.youscope.common.image.ImageEvent: Sets if the y-direction of images made by this camera should be transposed.
setTransposeY(boolean) - Method in interface org.youscope.common.microscope.CameraDevice: Sets if the y-direction of images made by this camera should be transposed.
setTransposeY(boolean) - Method in interface org.youscope.common.microscope.StageDevice: Sets if the y-direction should be transposed.
setTypeIdentifier(String) - Method in interface org.youscope.common.measurement.Measurement: Sets an identifier for the type of this measurement.
setUI(QuickLoggerUI) - Method in class org.youscope.client.uielements.QuickLogger: Sets the UI delegate for the logger.
setUnitMagnifier(double, int) - Method in interface org.youscope.addon.microscopeaccess.StageDeviceInternal: Sets the magnification factor from native stage device units to micro meters: microMeters = units * unitMagnifier
setUnitMagnifier(double) - Method in interface org.youscope.common.microscope.StageDevice: Sets the magnification factor from native stage device units to micro meters: microMeters = units * unitMagnifier
setUseClientScriptEngine(boolean) - Method in class org.youscope.plugin.scriptingjob.ScriptingJobConfiguration
setUserChoosesAutoAdjustContrast(boolean) - Method in class org.youscope.uielements.ImagePanel: Set to true to display a checkbox with which the user can choose on him/herself if the contrast should be automatically adjusted when a new image arrives.
setUserChoosesFullScreen(boolean) - Method in class org.youscope.uielements.LiveStreamPanel: Set to true to display a button with which the user can choose on him/herself if the LiveStream should be shown in full-screen mode.
setUseSyringe(boolean[]) - Method in class org.youscope.plugin.dropletmicrofluidics.evaporationController.EvaporationControllerConfiguration: Sets the syringes which should be used to correct evaporation.
setValue(Configuration, Object) - Method in class org.youscope.addon.component.generic.Property: Sets the value of the property.
setValue(Object) - Method in class org.youscope.addon.component.generic.PropertyEditorAdapter
setValue(float, int) - Method in interface org.youscope.addon.microscopeaccess.FloatPropertyInternal: Sets the current value of the property.
setValue(int, int) - Method in interface org.youscope.addon.microscopeaccess.IntegerPropertyInternal: Sets the current value of the property.
setValue(String, int) - Method in interface org.youscope.addon.microscopeaccess.PropertyInternal: Sets the current value of the property.
setValue(String, int) - Method in interface org.youscope.addon.microscopeaccess.StringPropertyInternal
setValue(String) - Method in class org.youscope.common.microscope.DeviceSetting: Sets the current value of the setting.
setValue(int) - Method in class org.youscope.common.microscope.DeviceSetting: Sets the current value of the setting.
setValue(float) - Method in class org.youscope.common.microscope.DeviceSetting: Sets the current value of the setting.
setValue(float) - Method in interface org.youscope.common.microscope.FloatProperty: Sets the current value of the property.
setValue(int) - Method in interface org.youscope.common.microscope.IntegerProperty: Sets the current value of the property.
setValue(String) - Method in interface org.youscope.common.microscope.Property: Sets the current value of the property.
setValue(String) - Method in interface org.youscope.common.microscope.StringProperty
setValue(Serializable) - Method in interface org.youscope.common.table.TableEntry: Sets the table value to the given argument.
setValue(TableEntry<? extends Serializable>) - Method in interface org.youscope.common.table.TableEntry: Sets the table value to the given tableEntry value.
setValue(String, int) - Method in class org.youscope.plugin.microscopeaccess.PropertyImpl
setValueRelative(float, int) - Method in interface org.youscope.addon.microscopeaccess.FloatPropertyInternal: Sets the value of the microscope relative to its current value.
setValueRelative(int, int) - Method in interface org.youscope.addon.microscopeaccess.IntegerPropertyInternal: Sets the value of the microscope relative to its current value.
setValueRelative(float) - Method in interface org.youscope.common.microscope.FloatProperty: Sets the value of the microscope relative to its current value.
setValueRelative(int) - Method in interface org.youscope.common.microscope.IntegerProperty: Sets the value of the microscope relative to its current value.
setValve(int, boolean) - Method in interface org.youscope.plugin.onix.OnixAddon: Sets if a given valve is active
setVariable(String, Object) - Static method in class org.youscope.plugin.matlabscripting.LocalMatlabProxy: Sets the variable to the given value.
setVariable(String, Object) - Method in interface org.youscope.plugin.matlabscripting.MatlabInternalProxy: Sets the variable to the given value.
setVariable(String, Object) - Method in class org.youscope.plugin.matlabscripting.RemoteMatlabProxy: Sets the variable to the given value.
setVariable(String, Object) - Static method in class org.youscope.plugin.matlabscripting.RemoteMatlabProxyController: Sets the variable to the given value.
setVisible(boolean) - Method in interface org.youscope.clientinterfaces.YouScopeFrame: Sets the visibility of the frame and its content.
setVisible(boolean) - Method in class org.youscope.uielements.GlassPane
setVisualizationAlgorithm(CellVisualizationAddon) - Method in interface org.youscope.plugin.lifecelldetection.CellDetectionJob: Sets the algorithm which should be used for cell visualization.
setVisualizationAlgorithmConfiguration(CellVisualizationConfiguration) - Method in class org.youscope.plugin.lifecelldetection.CellDetectionJobConfiguration: Set the configuration of the cell visualization algorithm to use.
setVisualizationAlgorithmConfiguration(CellVisualizationConfiguration) - Method in class org.youscope.plugin.lifecelldetection.CellDetectionMeasurementConfiguration: Set the configuration of the cell visualization algorithm to use.
setWaitBarMax(int) - Method in class org.youscope.uielements.GlassPane: Sets the progress when the waitbat should be full.
setWaitBarProgress(int) - Method in class org.youscope.uielements.GlassPane: Sets the current progress.
setWaitTime(long) - Method in interface org.youscope.common.job.basicjobs.WaitJob: Sets the time delay in ms.
setWaitTime(long) - Method in class org.youscope.plugin.waitjob.ExecuteAndWaitJobConfiguration: Sets the wait time in ms.
setWaitTime(long) - Method in class org.youscope.plugin.waitjob.WaitJobConfiguration: Sets the wait time in ms.
setWaitUntilFinished(boolean) - Method in interface org.youscope.plugin.onix.OnixJob: If true, the job waits when evaluating the onix protocol until the protocol is finished.
setWaitUntilFinished(boolean) - Method in class org.youscope.plugin.onix.OnixJobConfiguration: If true, the job waits when evaluating the onix protocol until the protocol is finished.
setWellHeight(double) - Method in class org.youscope.common.measurement.microplate.MicroplateConfiguration: Sets the height of one well (distance of well centers)
setWellMarginX(double) - Method in class org.youscope.common.measurement.microplate.MicroplateConfiguration: Sets the margin in each well between the well-border and the first measured point.
setWellMarginY(double) - Method in class org.youscope.common.measurement.microplate.MicroplateConfiguration: Sets the margin in each well between the well-border and the first measured point.
setWellNumPositionsX(int) - Method in class org.youscope.common.measurement.microplate.MicroplateConfiguration: Sets the number of positions measured in the x-direction in each well.
setWellNumPositionsY(int) - Method in class org.youscope.common.measurement.microplate.MicroplateConfiguration: Sets the number of positions measured in the y-direction in each well.
setWellWidth(double) - Method in class org.youscope.common.measurement.microplate.MicroplateConfiguration: Sets the width of one well (distance of well centers)
setX(double) - Method in class org.youscope.plugin.changepositionjob.ChangePositionJobConfiguration
setX(double) - Method in class org.youscope.plugin.microplatemeasurement.XYAndFocusPosition: Sets the value of the x-position in um.
setXPressureSetpoint(float) - Method in interface org.youscope.plugin.onix.OnixAddon: Sets the pressure setpoint in x.
setY(double) - Method in class org.youscope.plugin.changepositionjob.ChangePositionJobConfiguration
setY(double) - Method in class org.youscope.plugin.microplatemeasurement.XYAndFocusPosition: Sets the value of the y-position in um.
setYPressureSetpoint(float) - Method in interface org.youscope.plugin.onix.OnixAddon: Sets the pressure setpoint in y.
ShortContinuousImagingJob - Interface in org.youscope.plugin.continousimaging
ShortContinuousImagingJobConfiguration - Class in org.youscope.plugin.continousimaging
ShortContinuousImagingJobConfiguration() - Constructor for class org.youscope.plugin.continousimaging.ShortContinuousImagingJobConfiguration
showFrame(YouScopeFrameImpl) - Method in class org.youscope.client.YouScopeClientImpl: Shows the frame on the desktop content pane.
showInFrame(YouScopeFrame, String, TaskConfigurationListener) - Method in class org.youscope.uielements.TaskConfigurationPanel: Convenient method to show this panel in a frame with a close button.
showNativeUI() - Method in interface org.youscope.plugin.onix.OnixAddon: Displays the native Onix UI from CellAsic.
ShutterDevice - Interface in org.youscope.common.microscope
ShutterDeviceInternal - Interface in org.youscope.addon.microscopeaccess
SimpleMeasurementAddonFactory - Class in org.youscope.plugin.simplemeasurement
SimpleMeasurementAddonFactory() - Constructor for class org.youscope.plugin.simplemeasurement.SimpleMeasurementAddonFactory: Constructor.
SimpleMeasurementConfiguration - Class in org.youscope.plugin.simplemeasurement: This class represents the configuration of simple measurement, e.g.
SimpleMeasurementConfiguration() - Constructor for class org.youscope.plugin.simplemeasurement.SimpleMeasurementConfiguration
SimpleMeasurementContext - Class in org.youscope.common.measurement: A simple implementation of a measurement context.
SimpleMeasurementContext() - Constructor for class org.youscope.common.measurement.SimpleMeasurementContext: Constructor.
SimpleScoresAddonFactory - Class in org.youscope.plugin.simplefocusscores
SimpleScoresAddonFactory() - Constructor for class org.youscope.plugin.simplefocusscores.SimpleScoresAddonFactory: Constructor.
SingleComponentDefinitionPanel<C extends Configuration> - Class in org.youscope.uielements: Panel to select exactly one configuration of a list of supported configurations, and to configure this configuration.
SingleComponentDefinitionPanel(Class<C>, YouScopeClient, YouScopeFrame, Class<?>...) - Constructor for class org.youscope.uielements.SingleComponentDefinitionPanel: Constructor.
SingleComponentDefinitionPanel(Class<C>, C, YouScopeClient, YouScopeFrame, Class<?>...) - Constructor for class org.youscope.uielements.SingleComponentDefinitionPanel: Constructor.
Skin - Interface in org.youscope.addon.skin: Interface providing all needed functionality for a YouScope skin.
SkinFactory - Interface in org.youscope.addon.skin: Factory to provide different skins for the YouScope client.
SkinFactoryAdapter - Class in org.youscope.addon.skin: Adapter simplifying skin addon creation.
SkinFactoryAdapter(Class<? extends Skin>, AddonMetadata) - Constructor for class org.youscope.addon.skin.SkinFactoryAdapter: Constructor.
SkinFactoryAdapter() - Constructor for class org.youscope.addon.skin.SkinFactoryAdapter: Constructor.
skipPast(String) - Method in class org.json.JSONTokener: Skip characters until past the requested string.
skipTo(char) - Method in class org.json.JSONTokener: Skip characters until the next character is the requested character.
SLASH - Static variable in class org.json.XML: The Character '/'.
SlimIdentificationFactory - Class in org.youscope.plugin.slimidentification
SlimIdentificationFactory() - Constructor for class org.youscope.plugin.slimidentification.SlimIdentificationFactory: Constructor.
SlimJob - Interface in org.youscope.plugin.slimjob: Job to take SLIM images with four different phase shift patterns.
SlimJobAddonFactory - Class in org.youscope.plugin.slimjob
SlimJobAddonFactory() - Constructor for class org.youscope.plugin.slimjob.SlimJobAddonFactory: Constructor.
SlimJobConfiguration - Class in org.youscope.plugin.slimjob
SlimJobConfiguration() - Constructor for class org.youscope.plugin.slimjob.SlimJobConfiguration
SlimProperties - Class in org.youscope.plugin.slimjob: Class to conveniently get the value of the properties belonging to SLIM.
SlimProperties(YouScopeClient) - Constructor for class org.youscope.plugin.slimjob.SlimProperties: Constructor.
snapImage() - Method in interface org.youscope.plugin.usercontrolmeasurement.UserControlMeasurementCallbackListener: Invoked by the callback if the measurement should save the currently displayed image.
snapImage() - Method in class org.youscope.uielements.LiveStreamPanel: Snaps a single image with the current settings.
snappedImage() - Method in interface org.youscope.plugin.usercontrolmeasurement.UserControlMeasurementCallback: Notifies the callback that the last image was saved to disk.
StageDevice - Interface in org.youscope.common.microscope
StageDeviceInternal - Interface in org.youscope.addon.microscopeaccess
StaggeringJob - Interface in org.youscope.plugin.composedimaging
StaggeringJobAddonFactory - Class in org.youscope.plugin.composedimaging
StaggeringJobAddonFactory() - Constructor for class org.youscope.plugin.composedimaging.StaggeringJobAddonFactory: Constructor.
StaggeringJobConfiguration - Class in org.youscope.plugin.composedimaging
StaggeringJobConfiguration() - Constructor for class org.youscope.plugin.composedimaging.StaggeringJobConfiguration
StandardFormats - Class in org.youscope.uielements
StandardFormats() - Constructor for class org.youscope.uielements.StandardFormats
StandardProperty - Enum in org.youscope.clientinterfaces: Standard (default) properties of YouScope.
StandardSaveSettings - Class in org.youscope.plugin.standardsavesettings: Standard save settings, e.g.
StandardSaveSettings(PositionInformation, StandardSaveSettingsConfiguration) - Constructor for class org.youscope.plugin.standardsavesettings.StandardSaveSettings: Constructor.
StandardSaveSettingsConfiguration - Class in org.youscope.plugin.standardsavesettings: Configuration of a standard folder structure to save measurements.
StandardSaveSettingsConfiguration() - Constructor for class org.youscope.plugin.standardsavesettings.StandardSaveSettingsConfiguration
StandardSaveSettingsFactory - Class in org.youscope.plugin.standardsavesettings: Factory for standard save settings.
StandardSaveSettingsFactory() - Constructor for class org.youscope.plugin.standardsavesettings.StandardSaveSettingsFactory: Constructor.
StartAndEndSettingsPage - Class in org.youscope.addon.measurement.pages: A page with which the measurement start and end settings can be set.
StartAndEndSettingsPage(YouScopeClient, YouScopeServer) - Constructor for class org.youscope.addon.measurement.pages.StartAndEndSettingsPage: Constructor.
startContinuousSequenceAcquisition(ChannelInternal, double, ImageListener, int) - Method in interface org.youscope.addon.microscopeaccess.CameraDeviceInternal: Starts a continuous sequence acquisition.
startContinuousSequenceAcquisition(String, String, double, ImageListener) - Method in interface org.youscope.common.microscope.CameraDevice: Starts a continuous sequence acquisition.
Starter - Class in org.youscope.starter
startInitializing() - Method in interface org.youscope.clientinterfaces.YouScopeFrame: Indicates to the user, in one or the other way, that the content of the frame is currently initialized.
startJob(Job) - Method in interface org.youscope.common.scripting.ScriptInterface: Starts the measurement job.
startLiveStream() - Method in class org.youscope.uielements.LiveStreamPanel: Starts the live stream.
startLoading() - Method in interface org.youscope.clientinterfaces.YouScopeFrame: Similar to startInitializing(), only that in this case the UI is already initialized, but certain data has to be loaded e.g.
startMeasurement() - Method in interface org.youscope.common.measurement.Measurement: Starts the execution of the measurement.
startMeasurement() - Method in class org.youscope.plugin.livestream.ContinousMeasurementAndControlsPanel: Starts the continuous measurement.
startMeasurement() - Method in class org.youscope.plugin.livestream.ContinousMeasurementPanel: Starts the continuous measurement.
startMeasurement() - Method in class org.youscope.plugin.multicolorstream.MultiStreamPanel: Starts the continuous measurement.
startProgram() - Method in class org.youscope.client.YouScopeClientImpl: Starts and runs the client.
startProgram() - Method in class org.youscope.server.YouScopeServerImpl: Starts and run the main loop of the server.
startPWMX(long, double) - Method in interface org.youscope.plugin.onix.OnixAddon: Starts a pulse-width modulation between the two wells 1 and 2 with the X pressure.
startPWMY(long, double, double, double, double) - Method in interface org.youscope.plugin.onix.OnixAddon: Starts a pulse-width modulation between valves 3 to valve 6 with the Y pressure.
startServer() - Method in class org.youscope.server.YouScopeServerImpl: Adds the server to the registry such that it can be accessed by other processes or over the network.
startServer(int, String) - Method in class org.youscope.server.YouScopeServerImpl: Adds the server to the registry such that it can be accessed by other processes or over the network.
StateButton - Class in org.youscope.uielements: A component consisting of a label at the left and a little square at the right, being either red (deactivated) or green (activated).
StateButton(String) - Constructor for class org.youscope.uielements.StateButton: Constructor.
StateButton(String, boolean) - Constructor for class org.youscope.uielements.StateButton: Constructor.
StateDevice - Interface in org.youscope.common.microscope
StateDeviceInternal - Interface in org.youscope.addon.microscopeaccess
StatisticsJob - Interface in org.youscope.common.job.basicjobs: Interface of a measurement job which collects statistical data about the evaluation and appends it to a file.
StatisticsJobAddonFactory - Class in org.youscope.plugin.statistics: A factory for jobs gathering statistics about their sub-jobs runtime.
StatisticsJobAddonFactory() - Constructor for class org.youscope.plugin.statistics.StatisticsJobAddonFactory: Constructor.
StatisticsJobConfiguration - Class in org.youscope.plugin.statistics: This job/task displays a message to the user and waits for his or her acknowledgment.
StatisticsJobConfiguration() - Constructor for class org.youscope.plugin.statistics.StatisticsJobConfiguration
StatisticsTable - Class in org.youscope.plugin.statistics: Class to provide information about the layout of the table filled with statistics.
stopContinuousSequenceAcquisition(int) - Method in interface org.youscope.addon.microscopeaccess.CameraDeviceInternal: Stops the previously started continuous acquisition.
stopContinuousSequenceAcquisition() - Method in interface org.youscope.common.microscope.CameraDevice: Stops the previously started continuous acquisition.
stopLiveStream() - Method in class org.youscope.uielements.LiveStreamPanel: Stops the live stream.
stopLiveStreamAndWait() - Method in class org.youscope.uielements.LiveStreamPanel: Stops the live stream.
stopMeasurement() - Method in interface org.youscope.common.measurement.Measurement: Stops the execution of the measurement after all queued jobs were finished.
stopMeasurement() - Method in class org.youscope.plugin.livestream.ContinousMeasurementAndControlsPanel: Stops the measurement.
stopMeasurement() - Method in class org.youscope.plugin.livestream.ContinousMeasurementPanel: Stops the measurement.
stopMeasurement() - Method in class org.youscope.plugin.multicolorstream.MultiStreamPanel: Stops the measurement.
stopMeasurementAndWait() - Method in class org.youscope.plugin.livestream.ContinousMeasurementAndControlsPanel: Stops the measurement and waits until it is finished.
stopMeasurementAndWait() - Method in class org.youscope.plugin.livestream.ContinousMeasurementPanel: Stops the measurement and waits until it is finished.
stopMeasurementAndWait() - Method in class org.youscope.plugin.multicolorstream.MultiStreamPanel: Stops the measurement and waits until it is finished.
stopProtocol() - Method in interface org.youscope.plugin.onix.OnixAddon: Stops a currently executed protocol at the next possible step.
stopPWMX() - Method in interface org.youscope.plugin.onix.OnixAddon: Stops a pulse-width modulation which was previously started.
stopPWMY() - Method in interface org.youscope.plugin.onix.OnixAddon: Stops a pulse-width modulation which was previously started.
StringProperty - Interface in org.youscope.common.microscope
StringPropertyInternal - Interface in org.youscope.addon.microscopeaccess
SubConfigurationPanel<C extends Configuration> - Class in org.youscope.uielements: A configuration panel allowing to choose between all configurations of a given type, and then to configure this configuration.
SubConfigurationPanel(String, C, Class<C>, YouScopeClient, YouScopeFrame, Class<?>...) - Constructor for class org.youscope.uielements.SubConfigurationPanel: Constructor.
supportsCellVisualizationAddonID(String) - Method in interface org.youscope.addon.celldetection.CellVisualizationAddonFactory: Returns true if this factory supports Cell Visualization Addons with the given ID, false otherwise.
supportsFileNameExtension(String) - Method in class org.youscope.common.scripting.JavaScriptStyle
supportsFileNameExtension(String) - Method in class org.youscope.common.scripting.MatlabScriptStyle
supportsFileNameExtension(String) - Method in interface org.youscope.common.scripting.ScriptStyle: Returns true if the given file name extension is typically associated with scripts for which this style is made.
supportsFileNameExtension(String) - Method in class org.youscope.plugin.onix.OnixScriptStyle
supportsMicroscopeConnectionID(String) - Method in interface org.youscope.addon.microscopeaccess.MicroscopeConnectionFactory: Returns true if the plug-in supports the given microscope connection type, false otherwise.
supportsMicroscopeConnectionID(String) - Method in class org.youscope.plugin.microscopeaccess.MicroscopeConnectionFactoryImpl
syntaxError(String) - Method in class org.json.JSONTokener: Make a JSONException to signal a syntax error.
SyringeControlState - Enum in org.youscope.plugin.dropletmicrofluidics.flexiblecontroller: Defines if syringe should have a fixed flow rate, or if its flow rate should be varied either positively or negatively to correct for droplet heights.
SyringeState - Enum in org.youscope.plugin.dropletmicrofluidics.tablecontroller: State of a syringe, i.e.
SystemSkinFactory - Class in org.youscope.plugin.systemskin: Look and feel adjusting to the operating system default look and feel.
SystemSkinFactory() - Constructor for class org.youscope.plugin.systemskin.SystemSkinFactory: Constructor.

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