C-Index

A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

C

calculateScore(ImageEvent<?>) - Method in interface org.youscope.addon.focusscore.FocusScoreResource: Calculates the focus score for the given image.
Callback - Interface in org.youscope.common.callback: A measurement callback can be used by a measurement to gain control over functionality at creation time.
CallbackAddonFactory - Interface in org.youscope.addon.callback: A factory to create measurement callbacks.
callbackClosed() - Method in interface org.youscope.plugin.usercontrolmeasurement.UserControlMeasurementCallbackListener: Called when the user closed the callback UI.
CallbackCreationException - Exception in org.youscope.common.callback: Exception thrown if creation of a measurement callback failed.
CallbackCreationException(String) - Constructor for exception org.youscope.common.callback.CallbackCreationException: Constructor.
CallbackCreationException(String, Throwable) - Constructor for exception org.youscope.common.callback.CallbackCreationException: Constructor.
CallbackException - Exception in org.youscope.common.callback: Exception thrown by measurement callbacks.
CallbackException(String) - Constructor for exception org.youscope.common.callback.CallbackException: Constructor.
CallbackException(String, Throwable) - Constructor for exception org.youscope.common.callback.CallbackException: Constructor.
CallbackProvider - Interface in org.youscope.common.callback: A provider for Callback implementations.
CameraConfiguration - Class in org.youscope.common.configuration: Configuration of a camera, identifier by its camera device name.
CameraConfiguration() - Constructor for class org.youscope.common.configuration.CameraConfiguration: Default Constructor.
CameraConfiguration(String) - Constructor for class org.youscope.common.configuration.CameraConfiguration: Constructor.
CameraConfiguration(CameraConfiguration) - Constructor for class org.youscope.common.configuration.CameraConfiguration: Copy constructor.
CameraDevice - Interface in org.youscope.common.microscope
CameraDeviceInternal - Interface in org.youscope.addon.microscopeaccess: Internal interface used to control a camera.
CameraField - Class in org.youscope.uielements: UI element to select a camera device.
CameraField(YouScopeClient, YouScopeServer) - Constructor for class org.youscope.uielements.CameraField: Constructor.
CameraField(CameraConfiguration, YouScopeClient, YouScopeServer) - Constructor for class org.youscope.uielements.CameraField: Constructor.
CameraField(String, YouScopeClient, YouScopeServer) - Constructor for class org.youscope.uielements.CameraField: Constructor.
cancelTransfer() - Method in interface org.youscope.plugin.openbis.OpenBISAddon: Tries to interrupt a running transfer of data.
cancelTransfer() - Method in class org.youscope.plugin.openbis.OpenBISAddonImpl
canConvert(Class) - Method in class org.youscope.plugin.microplatemeasurement.FineConfigurationConverter
canConvert(Class) - Method in class org.youscope.plugin.microplatemeasurement.MeasuredWellsAndPositionsConverter
canRedo() - Method in class org.youscope.uielements.scripteditor.ScriptEditor: Returns true if an action can be redone.
canUndo() - Method in class org.youscope.uielements.scripteditor.ScriptEditor: Returns true if the last action can be undone.
capitalize(String) - Static method in class org.youscope.common.util.TextTools: Capitalizes the first, and each new word in the string.
capitalizeFirst(String) - Static method in class org.youscope.common.util.TextTools: Capitalizes the first character in the string.
CDL - Class in org.json: This provides static methods to convert comma delimited text into a JSONArray, and to covert a JSONArray into comma delimited text.
CDL() - Constructor for class org.json.CDL
CellDetectionAddon - Interface in org.youscope.addon.celldetection: A cell detection addon is a class supporting to detect cells in microscope images.
CellDetectionConfiguration - Class in org.youscope.addon.celldetection: Subclasses of this abstract class represent the configuration for a cell detection addon.
CellDetectionConfiguration() - Constructor for class org.youscope.addon.celldetection.CellDetectionConfiguration
CellDetectionException - Exception in org.youscope.addon.celldetection: Exception thrown by cell detection algorithms.
CellDetectionException(String, Throwable) - Constructor for exception org.youscope.addon.celldetection.CellDetectionException
CellDetectionException(String) - Constructor for exception org.youscope.addon.celldetection.CellDetectionException
CellDetectionJob - Interface in org.youscope.plugin.lifecelldetection: This job detects cells in the image passed to it.
CellDetectionJobAddonFactory - Class in org.youscope.plugin.lifecelldetection
CellDetectionJobAddonFactory() - Constructor for class org.youscope.plugin.lifecelldetection.CellDetectionJobAddonFactory: Constructor.
CellDetectionJobAddonUI - Class in org.youscope.plugin.lifecelldetection
CellDetectionJobAddonUI(YouScopeClient, YouScopeServer) - Constructor for class org.youscope.plugin.lifecelldetection.CellDetectionJobAddonUI: Constructor.
CellDetectionJobConfiguration - Class in org.youscope.plugin.lifecelldetection: This job takes an image an detects the cells therein.
CellDetectionJobConfiguration() - Constructor for class org.youscope.plugin.lifecelldetection.CellDetectionJobConfiguration
CellDetectionMeasurementAddonFactory - Class in org.youscope.plugin.lifecelldetection
CellDetectionMeasurementAddonFactory() - Constructor for class org.youscope.plugin.lifecelldetection.CellDetectionMeasurementAddonFactory: Constructor.
CellDetectionMeasurementConfiguration - Class in org.youscope.plugin.lifecelldetection: This class represents the configuration of a continuous measurement, for which the cells in the images are life detected.
CellDetectionMeasurementConfiguration() - Constructor for class org.youscope.plugin.lifecelldetection.CellDetectionMeasurementConfiguration
CellDetectionMeasurementInitializer - Class in org.youscope.plugin.lifecelldetection
CellDetectionMeasurementInitializer() - Constructor for class org.youscope.plugin.lifecelldetection.CellDetectionMeasurementInitializer
CellDetectionResult - Class in org.youscope.addon.celldetection: Result of a cell detection algorithm.
CellDetectionResult(Table) - Constructor for class org.youscope.addon.celldetection.CellDetectionResult: Constructor.
CellDetectionResult(Table, ImageEvent<?>) - Constructor for class org.youscope.addon.celldetection.CellDetectionResult: Constructor.
CellDetectionTableColumns - Class in org.youscope.addon.celldetection: Set of columns typically returned by cell detection addons.
CellDetectionTableColumns() - Constructor for class org.youscope.addon.celldetection.CellDetectionTableColumns
cellSelected - Variable in class org.youscope.uielements.CellSelectionTable
cellSelectionChanged(int, int, boolean) - Method in interface org.youscope.uielements.CellSelectionTable.CellSelectionListener: Function which is called when cell gets selected or unselected.
CellSelectionRenderer() - Constructor for class org.youscope.uielements.CellSelectionTable.CellSelectionRenderer
CellSelectionTable - Class in org.youscope.uielements
CellSelectionTable(int, int, CellSelectionTableConfiguration) - Constructor for class org.youscope.uielements.CellSelectionTable: Constructor.
CellSelectionTable.CellSelectionListener - Interface in org.youscope.uielements: Listener which is called when cell gets selected or unselected.
CellSelectionTable.CellSelectionRenderer - Class in org.youscope.uielements
CellSelectionTable.CellSelectionTableModel - Class in org.youscope.uielements
CellSelectionTable.CellSelectionTableTable - Class in org.youscope.uielements
CellSelectionTable.ColumnHeaderRenderer - Class in org.youscope.uielements
CellSelectionTable.RowHeaderListModel - Class in org.youscope.uielements
CellSelectionTable.RowHeaderRenderer - Class in org.youscope.uielements
CellSelectionTable.SelectionListener - Class in org.youscope.uielements
CellSelectionTableConfiguration - Interface in org.youscope.uielements
CellSelectionTableModel() - Constructor for class org.youscope.uielements.CellSelectionTable.CellSelectionTableModel
cellSize - Variable in class org.youscope.uielements.CellSelectionTable
CellVisualizationAddon - Interface in org.youscope.addon.celldetection: A cell visualization addon is a class supporting to visualize previously detected cells in microscope images by generating new images.
CellVisualizationAddonFactory - Interface in org.youscope.addon.celldetection: A factory to create cell detection addons.
CellVisualizationConfiguration - Class in org.youscope.addon.celldetection: Subclasses of this abstract class represent the configuration for a cell visualization addon.
CellVisualizationConfiguration() - Constructor for class org.youscope.addon.celldetection.CellVisualizationConfiguration
CellVisualizationException - Exception in org.youscope.addon.celldetection: Exception thrown by cell visualization algorithms.
CellVisualizationException(String, Throwable) - Constructor for exception org.youscope.addon.celldetection.CellVisualizationException
CellVisualizationException(String) - Constructor for exception org.youscope.addon.celldetection.CellVisualizationException
CellXAddonFactory - Class in org.youscope.plugin.cellx
CellXAddonFactory() - Constructor for class org.youscope.plugin.cellx.CellXAddonFactory: Constructor.
CellXConfiguration - Class in org.youscope.plugin.cellx
CellXConfiguration() - Constructor for class org.youscope.plugin.cellx.CellXConfiguration: Constructor.
CellXTable - Class in org.youscope.plugin.cellx: Provides information on the layout of the tables produced by the CellX cell detection algorithm.
changeListeners - Variable in class org.youscope.uielements.CellSelectionTable
ChangePositionJob - Interface in org.youscope.common.job.basicjobs: A job to change the stage's position.
ChangePositionJobAddonFactory - Class in org.youscope.plugin.changepositionjob
ChangePositionJobAddonFactory() - Constructor for class org.youscope.plugin.changepositionjob.ChangePositionJobAddonFactory: Constructor.
ChangePositionJobConfiguration - Class in org.youscope.plugin.changepositionjob: This job/task changes the position of the microscope in regular intervals.
ChangePositionJobConfiguration() - Constructor for class org.youscope.plugin.changepositionjob.ChangePositionJobConfiguration
Channel - Interface in org.youscope.common.microscope
ChannelConfiguration - Class in org.youscope.common.configuration: Configuration of a channel, identified by its channel name and configuration group name.
ChannelConfiguration() - Constructor for class org.youscope.common.configuration.ChannelConfiguration: Constructor.
ChannelConfiguration(String, String) - Constructor for class org.youscope.common.configuration.ChannelConfiguration: Constructor.
ChannelConfiguration(ChannelConfiguration) - Constructor for class org.youscope.common.configuration.ChannelConfiguration: Copy constructor.
ChannelControl(YouScopeClient, YouScopeServer) - Constructor for class org.youscope.uielements.LiveStreamPanel.ChannelControl: Constructor.
ChannelField - Class in org.youscope.uielements: UI element to select a channel and channel group.
ChannelField(YouScopeClient, YouScopeServer) - Constructor for class org.youscope.uielements.ChannelField: Constructor.
ChannelField(ChannelConfiguration, YouScopeClient, YouScopeServer) - Constructor for class org.youscope.uielements.ChannelField: Constructor.
ChannelField(String, String, YouScopeClient, YouScopeServer) - Constructor for class org.youscope.uielements.ChannelField: Constructor.
ChannelInternal - Interface in org.youscope.addon.microscopeaccess
ChannelManager - Interface in org.youscope.common.microscope: Allows access to the current microscope channel settings.
channelSettingsChanged() - Method in interface org.youscope.plugin.usercontrolmeasurement.UserControlMeasurementCallbackListener: Invoked by the callback if the channel to image in was changed.
checkConfiguration() - Method in class org.youscope.addon.celldetection.CellVisualizationConfiguration
checkConfiguration() - Method in class org.youscope.common.configuration.CameraConfiguration
checkConfiguration() - Method in class org.youscope.common.configuration.ChannelConfiguration
checkConfiguration() - Method in interface org.youscope.common.configuration.Configuration: Checks the current state of the configuration.
checkConfiguration() - Method in class org.youscope.common.configuration.FocusConfiguration
checkConfiguration() - Method in class org.youscope.common.job.JobConfiguration
checkConfiguration() - Method in class org.youscope.common.measurement.MeasurementConfiguration
checkConfiguration() - Method in class org.youscope.common.measurement.microplate.MicroplateConfiguration
checkConfiguration() - Method in class org.youscope.common.resource.ResourceConfiguration
checkConfiguration() - Method in class org.youscope.common.task.PeriodConfiguration
checkConfiguration() - Method in class org.youscope.common.task.RegularPeriodConfiguration
checkConfiguration() - Method in class org.youscope.common.task.TaskConfiguration
checkConfiguration() - Method in class org.youscope.common.task.VaryingPeriodConfiguration
checkConfiguration() - Method in class org.youscope.plugin.autofocus.AutoFocusJobConfiguration
checkConfiguration() - Method in class org.youscope.plugin.brentfocussearch.BrentFocusSearchConfiguration
checkConfiguration() - Method in class org.youscope.plugin.changepositionjob.ChangePositionJobConfiguration
checkConfiguration() - Method in class org.youscope.plugin.composedimaging.ComposedImagingJobConfiguration
checkConfiguration() - Method in class org.youscope.plugin.composedimaging.ComposedImagingMeasurementConfiguration
checkConfiguration() - Method in class org.youscope.plugin.composedimaging.PlateScanningJobConfiguration
checkConfiguration() - Method in class org.youscope.plugin.composedimaging.StaggeringJobConfiguration
checkConfiguration() - Method in class org.youscope.plugin.compositejob.CompositeJobConfiguration
checkConfiguration() - Method in class org.youscope.plugin.controller.ControllerJobConfiguration
checkConfiguration() - Method in class org.youscope.plugin.devicejob.DeviceJobConfiguration
checkConfiguration() - Method in class org.youscope.plugin.dropletmicrofluidics.defaultobserver.DefaultObserverConfiguration
checkConfiguration() - Method in class org.youscope.plugin.dropletmicrofluidics.DropletMicrofluidicJobConfiguration
checkConfiguration() - Method in class org.youscope.plugin.dropletmicrofluidics.evaporationController.EvaporationControllerConfiguration
checkConfiguration() - Method in class org.youscope.plugin.dropletmicrofluidics.flexiblecontroller.FlexibleControllerConfiguration
checkConfiguration() - Method in class org.youscope.plugin.dropletmicrofluidics.tablecontroller.TableControllerConfiguration
checkConfiguration() - Method in class org.youscope.plugin.exhaustivefocussearch.ExhaustiveFocusSearchConfiguration
checkConfiguration() - Method in class org.youscope.plugin.glowvisualizer.GlowVisualizerConfiguration
checkConfiguration() - Method in class org.youscope.plugin.imagingjob.ImagingJobConfiguration
checkConfiguration() - Method in class org.youscope.plugin.labelvisualizer.LabelVisualizerConfiguration
checkConfiguration() - Method in class org.youscope.plugin.matlabfocusscores.MatlabScoresConfiguration
checkConfiguration() - Method in class org.youscope.plugin.microplatemeasurement.MicroplateMeasurementConfiguration
checkConfiguration() - Method in class org.youscope.plugin.nemesys.NemesysJobConfiguration
checkConfiguration() - Method in class org.youscope.plugin.scriptingjob.ScriptingJobConfiguration
checkConfiguration() - Method in class org.youscope.plugin.simplefocusscores.AutocorrelationFocusScoreConfiguration
checkConfiguration() - Method in class org.youscope.plugin.simplefocusscores.VarianceFocusScoreConfiguration
checkConfiguration() - Method in class org.youscope.plugin.statistics.StatisticsJobConfiguration
checkConfiguration() - Method in class org.youscope.plugin.taskmeasurement.TaskMeasurementConfiguration
checkConfiguration() - Method in class org.youscope.plugin.waitjob.ExecuteAndWaitJobConfiguration
checkConfiguration() - Method in class org.youscope.plugin.waitjob.WaitJobConfiguration
checkConnection() - Method in interface org.youscope.plugin.matlabscripting.MatlabInternalProxy: This method does nothing.
checkImageSaveNameCollision(JobConfiguration[]) - Static method in class org.youscope.common.util.ConfigurationValidation: Recursively checks all job configurations in the provided array and all sub-jobs of these for colliding image save names.
clear() - Method in class org.youscope.common.table.TableDataAdapter: Clears any currently available table from this adapter.
clear() - Method in class org.youscope.uielements.DeviceSettingsPanel: Removes all initialized settings.
clearControls() - Method in class org.youscope.uielements.ImagePanel: Removes all added controls.
clearDeviceSettings() - Method in interface org.youscope.common.job.basicjobs.DeviceSettingJob: Removes all settings.
clearImage() - Method in class org.youscope.common.image.ImageAdapter: Returns the last image received by this adapter and sets the last image to null.
clearJobs() - Method in interface org.youscope.common.job.EditableJobContainer: Removes all jobs from this container.
clearJobs() - Method in class org.youscope.common.job.EditableJobContainerAdapter
clearJobs() - Method in interface org.youscope.common.job.JobContainerConfiguration: Removes all jobs from the job list.
clearJobs() - Method in class org.youscope.common.task.TaskConfiguration
clearJobs() - Method in class org.youscope.plugin.autofocus.AutoFocusJobConfiguration
clearJobs() - Method in class org.youscope.plugin.composedimaging.PlateScanningJobConfiguration
clearJobs() - Method in class org.youscope.plugin.composedimaging.StaggeringJobConfiguration
clearJobs() - Method in class org.youscope.plugin.compositejob.CompositeJobConfiguration
clearJobs() - Method in class org.youscope.plugin.customjob.CustomJobConfiguration
clearJobs() - Method in class org.youscope.plugin.deviceslides.DeviceSlidesJobConfiguration
clearJobs() - Method in class org.youscope.plugin.lifecelldetection.CellDetectionJobConfiguration
clearJobs() - Method in class org.youscope.plugin.livemodifiablejob.LiveModifiableJobConfiguration
clearJobs() - Method in class org.youscope.plugin.microplatejob.MicroplateJobConfiguration
clearJobs() - Method in class org.youscope.plugin.microplatemeasurement.MicroplateMeasurementConfiguration
clearJobs() - Method in class org.youscope.plugin.repeatjob.RepeatJobConfiguration
clearJobs() - Method in class org.youscope.plugin.scriptingjob.ScriptingJobConfiguration
clearJobs() - Method in class org.youscope.plugin.simplemeasurement.SimpleMeasurementConfiguration
clearJobs() - Method in class org.youscope.plugin.statistics.StatisticsJobConfiguration
clearJobs() - Method in class org.youscope.plugin.waitjob.ExecuteAndWaitJobConfiguration
clearJobs() - Method in class org.youscope.plugin.zslides.ZSlidesJobConfiguration
clearMessages() - Method in class org.youscope.client.uielements.DefaultQuickLoggerModel
clearMessages() - Method in class org.youscope.client.uielements.QuickLogger: Clears all messages of the logger.
clearMessages() - Method in interface org.youscope.client.uielements.QuickLoggerModel: Clears all messages/lines from the model.
clearPages() - Method in class org.youscope.addon.measurement.MeasurementAddonUIAdapter: Removes all pages from the current layout.
ClientAddonProvider - Interface in org.youscope.clientinterfaces: Provider with which YouScop client addons can be constructed.
clone() - Method in class org.youscope.addon.celldetection.CellDetectionConfiguration
clone() - Method in class org.youscope.addon.celldetection.CellDetectionResult
clone() - Method in class org.youscope.addon.celldetection.CellVisualizationConfiguration
clone() - Method in class org.youscope.addon.dropletmicrofluidics.DropletControllerResult
clone() - Method in class org.youscope.addon.dropletmicrofluidics.DropletObserverResult
clone() - Method in class org.youscope.addon.focusscore.FocusScoreConfiguration
clone() - Method in class org.youscope.addon.focussearch.FocusSearchConfiguration
clone() - Method in class org.youscope.common.configuration.CameraConfiguration
clone() - Method in class org.youscope.common.configuration.ChannelConfiguration
clone() - Method in class org.youscope.common.configuration.FocusConfiguration
clone() - Method in class org.youscope.common.ExecutionInformation
clone() - Method in class org.youscope.common.image.ImageEvent
clone() - Method in class org.youscope.common.job.JobConfiguration
clone() - Method in class org.youscope.common.measurement.MeasurementConfiguration
clone() - Method in class org.youscope.common.measurement.microplate.MicroplateConfiguration
clone() - Method in class org.youscope.common.measurement.microplate.Well
clone() - Method in class org.youscope.common.microscope.DeviceSetting
clone() - Method in class org.youscope.common.PositionInformation
clone() - Method in class org.youscope.common.resource.ResourceConfiguration
clone() - Method in class org.youscope.common.table.Table
clone() - Method in class org.youscope.common.table.TemporaryRow
clone() - Method in class org.youscope.common.task.PeriodConfiguration
clone() - Method in class org.youscope.common.task.RegularPeriodConfiguration
clone() - Method in class org.youscope.common.task.TaskConfiguration
clone() - Method in class org.youscope.common.task.VaryingPeriodConfiguration
clone() - Method in class org.youscope.plugin.ansisbsmicroplates.AnsiSBS1536MicroplateType
clone() - Method in class org.youscope.plugin.ansisbsmicroplates.AnsiSBS384MicroplateType
clone() - Method in class org.youscope.plugin.ansisbsmicroplates.AnsiSBS96MicroplateType
clone() - Method in class org.youscope.plugin.autofocus.AutoFocusJobConfiguration
clone() - Method in class org.youscope.plugin.bdbiosciencemicroplates.BDBioscienceMultiwellTC12MicroplateType
clone() - Method in class org.youscope.plugin.bdbiosciencemicroplates.BDBioscienceMultiwellTC24MicroplateType
clone() - Method in class org.youscope.plugin.bdbiosciencemicroplates.BDBioscienceMultiwellTC6MicroplateType
clone() - Method in class org.youscope.plugin.brentfocussearch.BrentFocusSearchConfiguration
clone() - Method in class org.youscope.plugin.cellx.CellXConfiguration
clone() - Method in class org.youscope.plugin.changepositionjob.ChangePositionJobConfiguration
clone() - Method in class org.youscope.plugin.composedimaging.ComposedImagingJobConfiguration
clone() - Method in class org.youscope.plugin.composedimaging.ComposedImagingMeasurementConfiguration
clone() - Method in class org.youscope.plugin.composedimaging.PlateScanningJobConfiguration
clone() - Method in class org.youscope.plugin.composedimaging.StaggeringJobConfiguration
clone() - Method in class org.youscope.plugin.compositejob.CompositeJobConfiguration
clone() - Method in class org.youscope.plugin.continousimaging.ContinousImagingMeasurementConfiguration
clone() - Method in class org.youscope.plugin.customjob.CustomJobConfiguration
clone() - Method in class org.youscope.plugin.devicejob.DeviceJobConfiguration
clone() - Method in class org.youscope.plugin.deviceslides.DeviceSlidesJobConfiguration
clone() - Method in class org.youscope.plugin.exhaustivefocussearch.ExhaustiveFocusSearchConfiguration
clone() - Method in class org.youscope.plugin.focusingjob.FocusingJobConfiguration
clone() - Method in class org.youscope.plugin.glowvisualizer.GlowVisualizerConfiguration
clone() - Method in class org.youscope.plugin.imagingjob.ImagingJobConfiguration
clone() - Method in class org.youscope.plugin.labelvisualizer.LabelVisualizerConfiguration
clone() - Method in class org.youscope.plugin.lifecelldetection.CellDetectionJobConfiguration
clone() - Method in class org.youscope.plugin.livemodifiablejob.LiveModifiableJobConfiguration
clone() - Method in class org.youscope.plugin.matlabfocusscores.MatlabScoresConfiguration
clone() - Method in class org.youscope.plugin.microplatemeasurement.MicroplateMeasurementConfiguration
clone() - Method in class org.youscope.plugin.microplatemeasurement.MicroplatePositionConfiguration
clone() - Method in class org.youscope.plugin.microplatemeasurement.WellAndTileIdentifier
clone() - Method in class org.youscope.plugin.microplatemeasurement.XYAndFocusPosition
clone() - Method in class org.youscope.plugin.onix.OnixJobConfiguration
clone() - Method in class org.youscope.plugin.onoffdevicejob.OnOffDeviceJobConfiguration
clone() - Method in class org.youscope.plugin.oscillatinginput.OscillatingDeviceJobConfiguration
clone() - Method in class org.youscope.plugin.outoffocus.OutOfFocusJobConfiguration
clone() - Method in class org.youscope.plugin.quickdetect.QuickDetectConfiguration
clone() - Method in class org.youscope.plugin.repeatjob.RepeatJobConfiguration
clone() - Method in class org.youscope.plugin.scriptingjob.ScriptingJobConfiguration
clone() - Method in class org.youscope.plugin.simplefocusscores.AutocorrelationFocusScoreConfiguration
clone() - Method in class org.youscope.plugin.simplefocusscores.VarianceFocusScoreConfiguration
clone() - Method in class org.youscope.plugin.simplemeasurement.SimpleMeasurementConfiguration
clone() - Method in class org.youscope.plugin.slimjob.SlimJobConfiguration
clone() - Method in class org.youscope.plugin.standardsavesettings.StandardSaveSettingsConfiguration
clone() - Method in class org.youscope.plugin.statistics.StatisticsJobConfiguration
clone() - Method in class org.youscope.plugin.taskmeasurement.TaskMeasurementConfiguration
clone() - Method in class org.youscope.plugin.waitforuser.WaitForUserJobConfiguration
clone() - Method in class org.youscope.plugin.waitjob.ExecuteAndWaitJobConfiguration
clone() - Method in class org.youscope.plugin.waitjob.WaitJobConfiguration
clone() - Method in class org.youscope.plugin.zslides.ZSlidesJobConfiguration
cloneImage(BufferedImage) - Static method in class org.youscope.common.util.ImageTools: Clones a buffered image.
close() - Method in class org.youscope.common.util.RMIReader
close() - Method in class org.youscope.common.util.RMIWriter
closeAddon() - Method in class org.youscope.addon.AddonUIAdapter: Call this function to signal that the addon user interface has finished doing what it is supposed to do, and might be closed now.
closeAddon() - Method in class org.youscope.addon.component.ComponentAddonUIAdapter: Call this function to signal that configuration in the UI has finished.
closeShutter(int) - Method in interface org.youscope.addon.microscopeaccess.ChannelInternal: Closes the shutter associated to the channel.
COLUMN_ABSOLUTE_FOCUS - Static variable in class org.youscope.plugin.autofocus.AutoFocusTable: Column containing absolute focus position in um of the focus search step.
COLUMN_CURRENT_DROPLET_ESTIMATED_OFFSET - Static variable in class org.youscope.plugin.dropletmicrofluidics.DropletMicrofluidicTable: Column containing estimated offset (in um) of droplet which was measured.
COLUMN_CURRENT_DROPLET_ID - Static variable in class org.youscope.plugin.dropletmicrofluidics.DropletMicrofluidicTable: Column containing index (zero based) of droplet which was measured.
COLUMN_CURRENT_DROPLET_MEASURED_OFFSET - Static variable in class org.youscope.plugin.dropletmicrofluidics.DropletMicrofluidicTable: Column containing measured offset (in um) of droplet which was measured.
COLUMN_DELTA_FLOW - Static variable in class org.youscope.plugin.dropletmicrofluidics.DropletMicrofluidicTable: Column containing delta flow (in ul/min) of all flow units together.
COLUMN_DROPLET_ESTIMATED_OFFSET - Static variable in class org.youscope.plugin.dropletmicrofluidics.DropletMicrofluidicTable: Column containing estimated offset (in um) of droplet.
COLUMN_DROPLET_ID - Static variable in class org.youscope.plugin.dropletmicrofluidics.DropletMicrofluidicTable: Column containing index (zero based) of droplet.
COLUMN_DROPLETS_MEAN_OFFSET - Static variable in class org.youscope.plugin.dropletmicrofluidics.DropletMicrofluidicTable: Column containing estimated mean offsets (in um) of droplets.
COLUMN_DURATION - Static variable in class org.youscope.plugin.statistics.StatisticsTable: Column containing time needed to execute job.
COLUMN_END_TIME - Static variable in class org.youscope.plugin.statistics.StatisticsTable: Column containing execution end time of job.
COLUMN_FLOW_RATE - Static variable in class org.youscope.plugin.fluigent.FluigentControlTable: Column specifying the target flow rate in ul/min the flow unit should be set to.
COLUMN_FLOW_RATE - Static variable in class org.youscope.plugin.nemesys.NemesysControlTable: Column specifying the target flow rate in ul/min the flow unit should be set to.
COLUMN_FLOW_UNIT - Static variable in class org.youscope.plugin.fluigent.FluigentControlTable: Column specifying the ID of the flow unit whose target flow should be changed.
COLUMN_FLOW_UNIT - Static variable in class org.youscope.plugin.nemesys.NemesysControlTable: Column specifying the ID (zero based) of the flow unit whose target flow should be changed.
COLUMN_FLOW_UNIT_FLOW_RATE - Static variable in class org.youscope.plugin.dropletmicrofluidics.DropletMicrofluidicTable: Column containing actual flow (in ul/min) of flow unit.
COLUMN_FLOW_UNIT_ID - Static variable in class org.youscope.plugin.dropletmicrofluidics.DropletMicrofluidicTable: Column containing index (zero based) of flow unit.
COLUMN_FOCAL_PLANE_ABSOLUTE_FOCUS - Static variable in class org.youscope.plugin.autofocus.AutoFocusTable: Column containing absolute focus position in um of the focus search step which turned out to have the highest score.
COLUMN_FOCAL_PLANE_FOCUS_SCORE - Static variable in class org.youscope.plugin.autofocus.AutoFocusTable: Column containing score of the focus position of the focus search step which turned out to have the highest score.
COLUMN_FOCAL_PLANE_FOCUS_STEP - Static variable in class org.youscope.plugin.autofocus.AutoFocusTable: Column containing the index (one based) of focus search step which turned out to have the highest score.
COLUMN_FOCAL_PLANE_RELATIVE_FOCUS - Static variable in class org.youscope.plugin.autofocus.AutoFocusTable: Column containing focus position in um relative to initial focus position of the focus search step which turned out to have the highest score.
COLUMN_FOCUS_SCORE - Static variable in class org.youscope.plugin.autofocus.AutoFocusTable: Column containing score of the focus position of the focus search step.
COLUMN_FOCUS_STEP - Static variable in class org.youscope.plugin.autofocus.AutoFocusTable: Column containing index (one based) of focus search step.
COLUMN_JOB_EXECUTION_INFORMATION - Static variable in class org.youscope.plugin.statistics.StatisticsTable: Column containing execution information of job.
COLUMN_JOB_NAME - Static variable in class org.youscope.plugin.statistics.StatisticsTable: Column containing job name.
COLUMN_JOB_POSITION_INFORMATION - Static variable in class org.youscope.plugin.statistics.StatisticsTable: Column containing position information of job.
COLUMN_RELATIVE_FOCUS - Static variable in class org.youscope.plugin.autofocus.AutoFocusTable: Column containing focus position in um relative to initial focus position of the focus search step.
COLUMN_START_TIME - Static variable in class org.youscope.plugin.statistics.StatisticsTable: Column containing execution start time of job.
ColumnDefinition<T extends java.io.Serializable> - Class in org.youscope.common.table: Definition of a table column.
ColumnDefinition(String, String, Class<T>, boolean) - Constructor for class org.youscope.common.table.ColumnDefinition: Creates a new Column definition with the given column name and value type.
ColumnView<T extends java.io.Serializable> - Interface in org.youscope.common.table: Represents a view on a column of a graph.
commitChanges(C) - Method in class org.youscope.addon.component.ComponentAddonUIAdapter: Is called when the current state of all forms etc.
commitChanges(C) - Method in class org.youscope.addon.component.GenericComponentAddonUI
commitChanges(T) - Method in class org.youscope.addon.measurement.MeasurementAddonUIAdapter
commitChanges(ControllerJobConfiguration) - Method in class org.youscope.plugin.controller.ControllerJobConfigurationAddon
commitChanges(FluigentJobConfiguration) - Method in class org.youscope.plugin.fluigent.FluigentJobConfigurationAddon
commitChanges(CellDetectionJobConfiguration) - Method in class org.youscope.plugin.lifecelldetection.CellDetectionJobAddonUI
commitChanges(MicroplateJobConfiguration) - Method in class org.youscope.plugin.microplatejob.MicroplateJobConfigurationAddon
commitEdit() - Method in class org.youscope.uielements.PeriodField: Forces the current value to be taken and set as the current value
commitEdits() - Method in class org.youscope.addon.component.generic.PropertyBooleanEditor
commitEdits() - Method in class org.youscope.addon.component.generic.PropertyCameraEditor
commitEdits() - Method in class org.youscope.addon.component.generic.PropertyChannelEditor
commitEdits() - Method in class org.youscope.addon.component.generic.PropertyDoubleEditor
commitEdits() - Method in interface org.youscope.addon.component.generic.PropertyEditor: When called, editor commits all current edits.
commitEdits() - Method in class org.youscope.addon.component.generic.PropertyEnumEditor
commitEdits() - Method in class org.youscope.addon.component.generic.PropertyFocusEditor
commitEdits() - Method in class org.youscope.addon.component.generic.PropertyIntegerEditor
commitEdits() - Method in class org.youscope.addon.component.generic.PropertyStringEditor
compareTo(CameraConfiguration) - Method in class org.youscope.common.configuration.CameraConfiguration
compareTo(ChannelConfiguration) - Method in class org.youscope.common.configuration.ChannelConfiguration
compareTo(Well) - Method in class org.youscope.common.measurement.microplate.Well
compareTo(XYAndFocusPosition) - Method in class org.youscope.plugin.microplatemeasurement.XYAndFocusPosition: Compares the two positions.
compareTo(PropertyInternal) - Method in class org.youscope.plugin.microscopeaccess.PropertyImpl
Component - Interface in org.youscope.common: Represents the base interface of all components of a measurement, that is, the mesurement itself, its tasks, the jobs and any eventually used resources.
ComponentAddonFactory - Interface in org.youscope.addon.component: General interface for all addons which create and provide a UI for the configuration of a measurement components.
ComponentAddonFactoryAdapter - Class in org.youscope.addon.component: Adapter simplifying addon creation.
ComponentAddonFactoryAdapter(Class<? extends ComponentAddonUI<C>>, Class<? extends Component>, ComponentMetadata<C>) - Constructor for class org.youscope.addon.component.ComponentAddonFactoryAdapter: Constructor.
ComponentAddonFactoryAdapter(String, Class<C>, Class<? extends Component>) - Constructor for class org.youscope.addon.component.ComponentAddonFactoryAdapter: Constructor.
ComponentAddonFactoryAdapter(Class<? extends ComponentAddonUI<C>>, CustomAddonCreator<C, ?>, ComponentMetadata<C>) - Constructor for class org.youscope.addon.component.ComponentAddonFactoryAdapter: Constructor.
ComponentAddonFactoryAdapter(String, Class<C>, CustomAddonCreator<C, ?>) - Constructor for class org.youscope.addon.component.ComponentAddonFactoryAdapter: Constructor.
ComponentAddonFactoryAdapter() - Constructor for class org.youscope.addon.component.ComponentAddonFactoryAdapter: Constructor.
ComponentAddonTools - Class in org.youscope.addon.component: Set of helpful functions to simplify configuration addon creation.
ComponentAddonUI<C extends Configuration> - Interface in org.youscope.addon.component: An addon providing a user interface for the configuration of a component.
ComponentAddonUIAdapter<C extends Configuration> - Class in org.youscope.addon.component: An adapter class to simplify UI addon development.
ComponentAddonUIAdapter(ComponentMetadata<C>, YouScopeClient, YouScopeServer) - Constructor for class org.youscope.addon.component.ComponentAddonUIAdapter: Constructor.
ComponentAddonUIListener<T extends Configuration> - Interface in org.youscope.addon.component: Listener which should be called when a configuration addon finished its configuration.
ComponentComboBox<C extends Configuration> - Class in org.youscope.uielements: A dropdown list to select components to configure.
ComponentComboBox(YouScopeClient, Class<C>, Class<?>...) - Constructor for class org.youscope.uielements.ComponentComboBox: Constructs a new combo box with all components added being of the given configuration class, and implementing all of the given required interfaces.
ComponentComboBox(YouScopeClient, Class<C>) - Constructor for class org.youscope.uielements.ComponentComboBox: Constructs a new combo box with all components added being of the given configuration class.
ComponentComboBox(Class<C>, ComponentMetadata<? extends C>[]) - Constructor for class org.youscope.uielements.ComponentComboBox: Constructs a new combo box with all components added being passed as a parameter.
ComponentCreationException - Exception in org.youscope.addon.component: Exception thrown if creation of a measurement component failed
ComponentCreationException(String) - Constructor for exception org.youscope.addon.component.ComponentCreationException: Constructor.
ComponentCreationException(String, Throwable) - Constructor for exception org.youscope.addon.component.ComponentCreationException: Constructor.
ComponentException - Exception in org.youscope.common: Base class of all exceptions thrown by measurement components.
ComponentException(String) - Constructor for exception org.youscope.common.ComponentException: Constructor.
ComponentException(Throwable) - Constructor for exception org.youscope.common.ComponentException: Constructor.
ComponentException(String, Throwable) - Constructor for exception org.youscope.common.ComponentException: Constructor.
ComponentMetadata<C extends Configuration> - Interface in org.youscope.addon.component: Provides metadata about a given measurement component.
ComponentMetadataAdapter<C extends Configuration> - Class in org.youscope.addon.component: Adapter class to simplify the construction of custom metadata for configurations.
ComponentMetadataAdapter(String, Class<C>, Class<? extends Component>, String, String[], String) - Constructor for class org.youscope.addon.component.ComponentMetadataAdapter: Constructor.
ComponentMetadataAdapter(String, Class<C>, Class<? extends Component>, String, String[]) - Constructor for class org.youscope.addon.component.ComponentMetadataAdapter: Constructor.
ComponentMetadataAdapter(String, Class<C>, Class<? extends Component>, String, String) - Constructor for class org.youscope.addon.component.ComponentMetadataAdapter: Constructor.
ComponentMetadataAdapter(String, Class<C>, Class<? extends Component>, String) - Constructor for class org.youscope.addon.component.ComponentMetadataAdapter: Constructor.
ComponentProvider - Interface in org.youscope.serverinterfaces: Interface to create measurement components like jobs or resources.
ComposedImagingJob - Interface in org.youscope.plugin.composedimaging
ComposedImagingJobAddonFactory - Class in org.youscope.plugin.composedimaging
ComposedImagingJobAddonFactory() - Constructor for class org.youscope.plugin.composedimaging.ComposedImagingJobAddonFactory: Constructor.
ComposedImagingJobConfiguration - Class in org.youscope.plugin.composedimaging
ComposedImagingJobConfiguration() - Constructor for class org.youscope.plugin.composedimaging.ComposedImagingJobConfiguration
ComposedImagingMeasurementAddonFactory - Class in org.youscope.plugin.composedimaging
ComposedImagingMeasurementAddonFactory() - Constructor for class org.youscope.plugin.composedimaging.ComposedImagingMeasurementAddonFactory: Constructor.
ComposedImagingMeasurementConfiguration - Class in org.youscope.plugin.composedimaging: This class represents a measurement which takes images in a two dimensional spatial array, such that the single pictures can be afterwards composed to a single big one.
ComposedImagingMeasurementConfiguration() - Constructor for class org.youscope.plugin.composedimaging.ComposedImagingMeasurementConfiguration
ComposedImagingMeasurementInitializer - Class in org.youscope.plugin.composedimaging
ComposedImagingMeasurementInitializer() - Constructor for class org.youscope.plugin.composedimaging.ComposedImagingMeasurementInitializer
CompositeJob - Interface in org.youscope.common.job.basicjobs: A job which consists of other jobs.
CompositeJobAddonFactory - Class in org.youscope.plugin.compositejob
CompositeJobAddonFactory() - Constructor for class org.youscope.plugin.compositejob.CompositeJobAddonFactory: Constructor.
CompositeJobConfiguration - Class in org.youscope.plugin.compositejob: A job consisting of other jobs.
CompositeJobConfiguration() - Constructor for class org.youscope.plugin.compositejob.CompositeJobConfiguration
Configuration - Interface in org.youscope.common.configuration: Marker interface that a given object is a YouScope configuration file.
configuration - Variable in class org.youscope.uielements.CellSelectionTable
CONFIGURATION_ID - Static variable in class org.youscope.plugin.brentfocussearch.BrentFocusSearchConfiguration: The identifier for this configuration.
CONFIGURATION_ID - Static variable in class org.youscope.plugin.exhaustivefocussearch.ExhaustiveFocusSearchConfiguration: The identifier for this configuration.
CONFIGURATION_ID - Static variable in class org.youscope.plugin.glowvisualizer.GlowVisualizerConfiguration: The identifier for this configuration.
CONFIGURATION_ID - Static variable in class org.youscope.plugin.labelvisualizer.LabelVisualizerConfiguration: The identifier for this configuration.
CONFIGURATION_ID - Static variable in class org.youscope.plugin.matlabfocusscores.MatlabScoresConfiguration: The identifier for this configuration.
CONFIGURATION_ID - Static variable in class org.youscope.plugin.simplefocusscores.AutocorrelationFocusScoreConfiguration: The identifier for this configuration.
CONFIGURATION_ID - Static variable in class org.youscope.plugin.simplefocusscores.VarianceFocusScoreConfiguration: The identifier for this configuration.
ConfigurationException - Exception in org.youscope.common.configuration
ConfigurationException(String) - Constructor for exception org.youscope.common.configuration.ConfigurationException: Constructor.
ConfigurationException(Throwable) - Constructor for exception org.youscope.common.configuration.ConfigurationException: Constructor.
ConfigurationException(String, Throwable) - Constructor for exception org.youscope.common.configuration.ConfigurationException: Constructor.
configurationFinished(T) - Method in interface org.youscope.addon.component.ComponentAddonUIListener: Should be invoked when the configuration is finished.
ConfigurationManagement - Class in org.youscope.addon: This class exposes methods which load/save configurations.
ConfigurationManagement() - Constructor for class org.youscope.addon.ConfigurationManagement
ConfigurationValidation - Class in org.youscope.common.util: Provides methods to check a configuration for validity.
ConfigurationValidation() - Constructor for class org.youscope.common.util.ConfigurationValidation
connectFromMatlab(String) - Static method in class org.youscope.plugin.matlabscripting.MatlabConnector: Called from MATLAB to create a controller, wrap it in a proxy, and then send it over RMI to the Java program running in a separate JVM.
connectionEstablished(RemoteMatlabProxy) - Method in interface org.youscope.plugin.matlabscripting.MatlabConnectionListener: Called when the connection to the proxy has been established.
connectionLost(RemoteMatlabProxy) - Method in interface org.youscope.plugin.matlabscripting.MatlabConnectionListener: Called when the connection to the proxy has been lost.
connectToServer() - Method in class org.youscope.client.YouScopeClientImpl: Connects to the server over a network.
connectToServer(String, int, String) - Method in class org.youscope.client.YouScopeClientImpl: Connects to the server over a network.
connectToServer(YouScopeServer) - Method in class org.youscope.client.YouScopeClientImpl: Connects to the provided server object.
CONSTRAINT_CENTER - Static variable in class org.youscope.uielements.DynamicPanel: The element will be centered at the line, and the next element will be placed below.
CONSTRAINT_NEW_LINE - Static variable in class org.youscope.uielements.DynamicPanel: Standard constraints used when adding an element without arguments.
ConstructionContext - Interface in org.youscope.serverinterfaces: Interface handed over to addons during the construction/initialization of a measurement and its components.
consumeTable(Table) - Method in interface org.youscope.common.table.TableConsumer: Passes the table to the measurement component, such that it can interpret it the next time it is executed.
ContinousImagingMeasurementAddonFactory - Class in org.youscope.plugin.continousimaging
ContinousImagingMeasurementAddonFactory() - Constructor for class org.youscope.plugin.continousimaging.ContinousImagingMeasurementAddonFactory: Constructor.
ContinousImagingMeasurementConfiguration - Class in org.youscope.plugin.continousimaging: This class represents the configuration of a user configurable measurement.
ContinousImagingMeasurementConfiguration() - Constructor for class org.youscope.plugin.continousimaging.ContinousImagingMeasurementConfiguration
ContinousImagingMeasurementInitializer - Class in org.youscope.plugin.continousimaging
ContinousImagingMeasurementInitializer() - Constructor for class org.youscope.plugin.continousimaging.ContinousImagingMeasurementInitializer
ContinousMeasurementAndControlsPanel - Class in org.youscope.plugin.livestream: A panel containing the UI to view and control a continuous measurement.
ContinousMeasurementAndControlsPanel(YouScopeClient, YouScopeServer) - Constructor for class org.youscope.plugin.livestream.ContinousMeasurementAndControlsPanel: Constructor.
ContinousMeasurementPanel - Class in org.youscope.plugin.livestream: A panel showing the images of a continuous measurement.
ContinousMeasurementPanel(YouScopeClient, YouScopeServer, String, int, String, String, double, boolean) - Constructor for class org.youscope.plugin.livestream.ContinousMeasurementPanel: Constructor.
ContinuousImagingJob - Interface in org.youscope.common.job.basicjobs
ContinuousImagingJobConfiguration - Class in org.youscope.plugin.continousimaging
ContinuousImagingJobConfiguration() - Constructor for class org.youscope.plugin.continousimaging.ContinuousImagingJobConfiguration
ContinuousImagingJobFactory - Class in org.youscope.plugin.continousimaging
ContinuousImagingJobFactory() - Constructor for class org.youscope.plugin.continousimaging.ContinuousImagingJobFactory: Constructor.
ControllerCallback - Interface in org.youscope.plugin.controller: Callback given to the control algorithm such that it can obtain its state and the values of the inputs, and set the output.
ControllerException - Exception in org.youscope.plugin.controller: Exception thrown by the controller if control algorithm failed.
ControllerException(String) - Constructor for exception org.youscope.plugin.controller.ControllerException: Constructor.
ControllerException(Throwable) - Constructor for exception org.youscope.plugin.controller.ControllerException: Constructor.
ControllerException(String, Throwable) - Constructor for exception org.youscope.plugin.controller.ControllerException: Constructor.
ControllerJob - Interface in org.youscope.plugin.controller: Job which implements a controller, consisting of an input, a control algorithm and an output.
ControllerJobAddonFactory - Class in org.youscope.plugin.controller
ControllerJobAddonFactory() - Constructor for class org.youscope.plugin.controller.ControllerJobAddonFactory: Constructor.
ControllerJobConfiguration - Class in org.youscope.plugin.controller: This job takes takes an input from a table data producer and generates an output, i.e.
ControllerJobConfiguration() - Constructor for class org.youscope.plugin.controller.ControllerJobConfiguration
ControllerJobConfigurationAddon - Class in org.youscope.plugin.controller
ControllerJobConfigurationAddon(YouScopeClient, YouScopeServer) - Constructor for class org.youscope.plugin.controller.ControllerJobConfigurationAddon: Constructor.
ControllerTable - Class in org.youscope.plugin.controller
ControllerTable() - Constructor for class org.youscope.plugin.controller.ControllerTable
Converter - Class in org.youscope.documentation.converter
Converter() - Constructor for class org.youscope.documentation.converter.Converter
convertToShortFileName(String) - Static method in class org.youscope.plugin.matlabscripting.util.LongFileNameToShort: Converts a Windows long file name to its short file name (8.3 DOS-like file names).
Cookie - Class in org.json: Convert a web browser cookie specification to a JSONObject and back.
Cookie() - Constructor for class org.json.Cookie
CookieList - Class in org.json: Convert a web browser cookie list string to a JSONObject and back.
CookieList() - Constructor for class org.json.CookieList
copyConfiguration(CameraConfiguration) - Method in class org.youscope.common.configuration.CameraConfiguration: Copies the content (i.e.
copyConfiguration(ChannelConfiguration) - Method in class org.youscope.common.configuration.ChannelConfiguration: Copies the content of the channel configuration into this configuration.
createBindings() - Method in class org.youscope.plugin.matlabscripting.MatlabScriptEngine
createBooleanColumnDefinition(String, String, boolean) - Static method in class org.youscope.common.table.ColumnDefinition: Creates a new Column definition for Boolean value types.
createCallback(String, YouScopeClient, YouScopeServer) - Method in interface org.youscope.addon.callback.CallbackAddonFactory: Returns a new measurement callback for the given type identifier.
createCallback(String) - Method in interface org.youscope.common.callback.CallbackProvider: Returns a callback with the given type identifier.
createCallback(String, Class<T>) - Method in interface org.youscope.common.callback.CallbackProvider: Returns a callback with the given type identifier implementing a given interface.
createCallback(String, YouScopeClient, YouScopeServer) - Method in class org.youscope.plugin.dropletmicrofluidics.DropletMicrofluidicJobCallbackFactory
createCallback(String, YouScopeClient, YouScopeServer) - Method in class org.youscope.plugin.livemodifiablejob.LiveModifiableJobCallbackFactory
createCallback(String, YouScopeClient, YouScopeServer) - Method in class org.youscope.plugin.scripting.RemoteScriptEngineFactory
createCallback(String, YouScopeClient, YouScopeServer) - Method in class org.youscope.plugin.usercontrolmeasurement.UserControlMeasurementCallbackFactory
createCallback(String, YouScopeClient, YouScopeServer) - Method in class org.youscope.plugin.waitforuser.WaitForUserCallbackFactory
createCellVisualizationAddon(String) - Method in interface org.youscope.addon.celldetection.CellVisualizationAddonFactory: Returns a new Cell Visualization Addon for the given ID, or null if this factory does not support addons with the given ID.
createChildFrame() - Method in interface org.youscope.clientinterfaces.YouScopeFrame: Creates a non-modal child frame.
createColumnDefinition(String, String, Class<T>, boolean) - Static method in class org.youscope.common.table.ColumnDefinition: Creates a new Column definition with the given column name and value type.
createComponent(PositionInformation, Configuration, ConstructionContext) - Method in interface org.youscope.addon.component.ComponentAddonFactory: Creates an addon for the given configuration.
createComponent(PositionInformation, Configuration, ConstructionContext) - Method in class org.youscope.addon.component.ComponentAddonFactoryAdapter
createComponent(PositionInformation, Configuration, ConstructionContext) - Method in class org.youscope.plugin.customjob.CustomJobAddonFactory
createComponent(PositionInformation, Configuration) - Method in interface org.youscope.serverinterfaces.ComponentProvider: Creates a measurement component for the given configuration.
createComponent(PositionInformation, String, Class<T>) - Method in interface org.youscope.serverinterfaces.ComponentProvider: Creates a component with the given type identifier and its default configuration, which additionally has a given interface.
createComponent(PositionInformation, String) - Method in interface org.youscope.serverinterfaces.ComponentProvider: Creates a component with the given type identifier and its default configuration Note that not all components support default construction.
createComponent(PositionInformation, Configuration, Class<T>) - Method in interface org.youscope.serverinterfaces.ComponentProvider: Creates a measurement component of a given type for the given configuration.
createComponentUI(String, YouScopeClient, YouScopeServer) - Method in interface org.youscope.addon.component.ComponentAddonFactory: Returns a new UI to configure a component of the given type identifier.
createComponentUI(String, YouScopeClient, YouScopeServer) - Method in class org.youscope.addon.component.ComponentAddonFactoryAdapter
createComponentUI(String) - Method in interface org.youscope.clientinterfaces.ClientAddonProvider: Creates a component addon user interface for the given type identifier.
createComponentUI(String, Class<T>) - Method in interface org.youscope.clientinterfaces.ClientAddonProvider: Creates a component addon user interface with the given type identifier, producing component comfigurations of the given configuration class.
createComponentUI(T) - Method in interface org.youscope.clientinterfaces.ClientAddonProvider: Creates an component addon user interface compatible with the configuration, and initializes it with the configuration.
createComponentUI(ComponentMetadata<T>) - Method in interface org.youscope.clientinterfaces.ClientAddonProvider: Creates an component addon user interface compatible with the configuration metadata.
createComponentUI(String, YouScopeClient, YouScopeServer) - Method in class org.youscope.plugin.customjob.CustomJobAddonFactory
createConnection() - Static method in class org.youscope.plugin.matlabscripting.RemoteMatlabProxyController: Create a connection to MATLAB.
createContinuousMeasurement(String, String, String, int, double, ImageListener) - Method in interface org.youscope.serverinterfaces.MeasurementProvider: Convenience function to create a measurement, in which every imagingPeriod ms an image is made in the given channel with the given period, using the default camera.
createCustom(PositionInformation, C, ConstructionContext) - Method in interface org.youscope.addon.component.CustomAddonCreator: Creates an component for the given configuration.
createDefaultPath(double, double) - Method in class org.youscope.plugin.microplatemeasurement.MicroplatePositionConfiguration: Creates a default path given this configuration.
createDefaultPath(double, double, double) - Method in class org.youscope.plugin.microplatemeasurement.MicroplatePositionConfiguration: Creates a default path given this configuration.
createDoubleColumnDefinition(String, String, boolean) - Static method in class org.youscope.common.table.ColumnDefinition: Creates a new Column definition for Double value types.
createEntry(Class<T>, T, boolean) - Static method in class org.youscope.common.table.TableHelper: Creates a table entry containing the given value.
createFloatColumnDefinition(String, String, boolean) - Static method in class org.youscope.common.table.ColumnDefinition: Creates a new Column definition for Float value types.
createFrame() - Method in interface org.youscope.clientinterfaces.YouScopeClient: Creates a new content window.
createFrame() - Method in interface org.youscope.clientinterfaces.YouScopeFrame: Creates a new non-modal frame.
createImage(T, int, int, int) - Static method in class org.youscope.common.image.ImageEvent: Creates a new image with the given image data and meta information.
createImage(T, int, int) - Static method in class org.youscope.common.image.ImageEvent: Creates a new image with the given image data and meta information.
createImageStorage(ImageProducer) - Method in interface org.youscope.common.scripting.ScriptInterface: Creates a new storage class which stores images from an imaging job such that the script can get the image data.
createIntegerColumnDefinition(String, String, boolean) - Static method in class org.youscope.common.table.ColumnDefinition: Creates a new Column definition for Integer value types.
createJob(PositionInformation, JobConfiguration) - Method in interface org.youscope.serverinterfaces.ComponentProvider: Creates a job for the given configuration.
createJob(PositionInformation, String, Class<T>) - Method in interface org.youscope.serverinterfaces.ComponentProvider: Creates a job which has a given type identifier and interface with its default configuration.
createJob(PositionInformation, String) - Method in interface org.youscope.serverinterfaces.ComponentProvider: Creates a job which has a given type identifier with its default configuration.
createJob(PositionInformation, JobConfiguration, Class<T>) - Method in interface org.youscope.serverinterfaces.ComponentProvider: Creates a job of a given class for the given configuration.
createLongColumnDefinition(String, String, boolean) - Static method in class org.youscope.common.table.ColumnDefinition: Creates a new Column definition for Long value types.
createMeasurement() - Method in interface org.youscope.serverinterfaces.MeasurementProvider: Creates a new empty measurement.
createMeasurement(int) - Method in interface org.youscope.serverinterfaces.MeasurementProvider: Creates a new empty measurement.
createMeasurement(MeasurementConfiguration) - Method in interface org.youscope.serverinterfaces.MeasurementProvider: Creates a new measurement from the configuration.
createMeasurement(MeasurementConfiguration, CallbackProvider) - Method in interface org.youscope.serverinterfaces.MeasurementProvider: Creates a new measurement from the configuration.
createMeasurementUI(String, YouScopeClient, YouScopeServer) - Method in interface org.youscope.addon.measurement.MeasurementAddonFactory: Returns a new measurement configuration addon for the given ID, or null if addon does not support the configuration of measurements witht the given ID.
createMeasurementUI(String, YouScopeClient, YouScopeServer) - Method in class org.youscope.addon.measurement.MeasurementAddonFactoryAdapter
createMicroplateType(String) - Method in interface org.youscope.addon.microplate.MicroplateAddonFactory: Returns a new MicroplateType for the given type identifier, or throws an AddonException if this factory does not support microplates with the given type identifier.
createMicroplateType(String) - Method in class org.youscope.plugin.ansisbsmicroplates.AnsiSBSMicroplateTypeFactory
createMicroplateType(String) - Method in class org.youscope.plugin.bdbiosciencemicroplates.BDBioscienceMultiwellTCMicroplateTypeFactory
createMicroplateType(String) - Method in class org.youscope.plugin.custommicroplates.CustomMicroplateTypeFactory
createMicroscopeConnection(String, String) - Method in interface org.youscope.addon.microscopeaccess.MicroscopeConnectionFactory: Returns a new interface through which the drivers of the microscope can be accessed.
createMicroscopeConnection(String, String) - Method in class org.youscope.plugin.microscopeaccess.MicroscopeConnectionFactoryImpl
createModalChildFrame() - Method in interface org.youscope.clientinterfaces.YouScopeFrame: Creates a modal child frame.
createPostProcessorUI(String, YouScopeClient, YouScopeServer, String) - Method in interface org.youscope.addon.postprocessing.PostProcessorAddonFactory: Returns a new post-processing addon UI for the given type identifier, or null if factory does not support the post-processing type identifier.
createPostProcessorUI(String, String) - Method in interface org.youscope.clientinterfaces.ClientAddonProvider: Creates a post processor user interface for the given type identifier.
createPostProcessorUI(T, String) - Method in interface org.youscope.clientinterfaces.ClientAddonProvider: Creates an post processor user interface compatible with the metadata.
createPostProcessorUI(String, YouScopeClient, YouScopeServer, String) - Method in class org.youscope.plugin.cellx.OpenCellXFactory
createPostProcessorUI(String, YouScopeClient, YouScopeServer, String) - Method in class org.youscope.plugin.measurementviewer.MeasurementViewerPostProcessingFactory
createPostProcessorUI(String, YouScopeClient, YouScopeServer, String) - Method in class org.youscope.plugin.openbis.OpenBISUploaderFactory
createPostProcessorUI(String, YouScopeClient, YouScopeServer, String) - Method in class org.youscope.plugin.openmeasurementfolder.OpenMeasurementFolderFactory
createSkin(String) - Method in interface org.youscope.addon.skin.SkinFactory: Creates a skin for the given type identifier Throws a addon exception if the type identifier is not supported.
createSkin(String) - Method in class org.youscope.addon.skin.SkinFactoryAdapter
createStringColumnDefinition(String, String, boolean) - Static method in class org.youscope.common.table.ColumnDefinition: Creates a new Column definition for String value types.
createTemporaryRow() - Method in class org.youscope.common.table.Table: Creates a temporary row.
createToolUI(String, YouScopeClient, YouScopeServer) - Method in interface org.youscope.addon.tool.ToolAddonFactory: Returns the UI of a Tool for the given type identifier.
createToolUI(String, YouScopeClient, YouScopeServer) - Method in class org.youscope.addon.tool.ToolAddonFactoryAdapter
createToolUI(String) - Method in interface org.youscope.clientinterfaces.ClientAddonProvider: Creates a tool user interface for the given type identifier.
createToolUI(ToolMetadata) - Method in interface org.youscope.clientinterfaces.ClientAddonProvider: Creates a tool user interface compatible with the metadata.
createUI() - Method in class org.youscope.addon.AddonUIAdapter: Return a Component (typically a JPanel) containing the UI elements of the addon.
createUI() - Method in class org.youscope.addon.component.ComponentAddonUIAdapter
createUI(C) - Method in class org.youscope.addon.component.ComponentAddonUIAdapter: Return a Component (typically a JPanel) containing the UI elements of the addon.
createUI(C) - Method in class org.youscope.addon.component.GenericComponentAddonUI
createUI(T) - Method in class org.youscope.addon.measurement.MeasurementAddonUIAdapter
createUI(YouScopeFrame) - Method in class org.youscope.addon.measurement.MeasurementAddonUIPage: Called to create the UI elements during the loading process.
createUI(YouScopeFrame) - Method in class org.youscope.addon.measurement.pages.DescriptionPage
createUI(YouScopeFrame) - Method in class org.youscope.addon.measurement.pages.GeneralSettingsPage
createUI(YouScopeFrame) - Method in class org.youscope.addon.measurement.pages.StartAndEndSettingsPage
createUI(JComponent) - Static method in class org.youscope.client.uielements.plaf.BasicQuickLoggerUI
createUI(JComponent) - Static method in class org.youscope.client.uielements.plaf.ImageDesktopPaneUI
createUI(ControllerJobConfiguration) - Method in class org.youscope.plugin.controller.ControllerJobConfigurationAddon
createUI(FluigentJobConfiguration) - Method in class org.youscope.plugin.fluigent.FluigentJobConfigurationAddon
createUI(CellDetectionJobConfiguration) - Method in class org.youscope.plugin.lifecelldetection.CellDetectionJobAddonUI
createUI(YouScopeFrame) - Method in class org.youscope.plugin.microplatejob.JobConfigurationPage: Called to create the UI elements during the loading process.
createUI(YouScopeFrame) - Method in class org.youscope.plugin.microplatejob.JobConfigurationPanel: Creates the UI of this panel.
createUI(MicroplateJobConfiguration) - Method in class org.youscope.plugin.microplatejob.MicroplateJobConfigurationAddon
createUI() - Method in class org.youscope.template.tool.TemplateTool
CRLF - Static variable in class org.json.HTTP: Carriage return/line feed.
currentMeasurementChanged() - Method in interface org.youscope.common.microscope.MicroscopeStateListener: Thrown when the current measurement changed.
CustomAddonCreator<C extends Configuration,T extends Component> - Interface in org.youscope.addon.component: Interface which has to be implemented if the creation of a component, given its configuration, should be done differently from the default mechanism.
CustomJob - Interface in org.youscope.plugin.customjob: A job consisting of other jobs, which can be configured by the user.
CustomJobAddonFactory - Class in org.youscope.plugin.customjob
CustomJobAddonFactory() - Constructor for class org.youscope.plugin.customjob.CustomJobAddonFactory
CustomJobConfiguration - Class in org.youscope.plugin.customjob: A job consisting of other jobs, which can be defined by the user.
CustomJobConfiguration() - Constructor for class org.youscope.plugin.customjob.CustomJobConfiguration
CustomJobException - Exception in org.youscope.plugin.customjob: Exception thrown by a job to indicate that initializing a custom job, creating or deleting it, or similar, failed.
CustomJobException(String) - Constructor for exception org.youscope.plugin.customjob.CustomJobException: Constructor.
CustomJobException(Throwable) - Constructor for exception org.youscope.plugin.customjob.CustomJobException: Constructor.
CustomJobException(String, Throwable) - Constructor for exception org.youscope.plugin.customjob.CustomJobException: Constructor.
CustomJobToolFactory - Class in org.youscope.plugin.customjob
CustomJobToolFactory() - Constructor for class org.youscope.plugin.customjob.CustomJobToolFactory: Constructor.
CustomMicroplatesFactory - Class in org.youscope.plugin.custommicroplates
CustomMicroplatesFactory() - Constructor for class org.youscope.plugin.custommicroplates.CustomMicroplatesFactory: Constructor.
CustomMicroplatesManager - Class in org.youscope.plugin.custommicroplates
CustomMicroplatesManager() - Constructor for class org.youscope.plugin.custommicroplates.CustomMicroplatesManager
CustomMicroplateTypeFactory - Class in org.youscope.plugin.custommicroplates
CustomMicroplateTypeFactory() - Constructor for class org.youscope.plugin.custommicroplates.CustomMicroplateTypeFactory: Constructor.

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